| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_3163 |
|---|
| Symbol | lpxC |
|---|
| ID | 6976601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011365 |
|---|
| Strand | - |
|---|
| Start bp | 3463284 |
|---|
| End bp | 3464309 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643392675 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_002277508 |
|---|
| Protein GI | 209545279 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGTA TGCTGGCAAT TCCGGGGCAT GATACTGTGT CCTCTGTCGG TGTATCTTCT
GGCAGCGCCC CCTCGGGTGC CACCTCGTCC GGCAGCCCCG CCCCCGCGCG CGCGGCGGTA
CGCACGGCGC GGCAGCATAC GCTGGGCAAT TCCATTTCCT CCATCGGCGT CGGGCTGCAT
ACCGGGCGGC GCATTCGCCT GACGCTGCAT CCGGCGGCGG AAAATACCGG CATCGTCTTC
CGGCGCACCG ACCTGGACGA CCGCACCATT CCGGCCCGGT TCGACCATGT CGTCGATACG
CGGCTGAGCA CCGTCATCGG CGATGCCACG GACCCCGCGC TGCGCATCGC CACCATCGAA
CATCTGATGT CCGCCCTGTC GGGAAGCGGC GTCGACAATG TGCTGATCGA TGTCGACGGG
CCGGAAATCC CGGTCTTCGA CGGCTCGGCG GCCGATTTCA TCTTCCTGCT GGATTGCGCG
GGCCTGGCGG AACAGGCCGC CCCGCGCACC GCGATCGACG TCCTGCGCCC CGTTCGCGTG
ACCGAGGGTG ACGCCTTCGC CGAACTGCGC CCGGGCCGCG AGGGCGGGTT GTCGCTGACC
CTGTCCATCG ACTTCCCCGC CGCCGCGATC GGCGAGCAGA CGTTTGCGAC CCGTCTGGAC
CGTCAGGGCT ACCGTGCCGA AATCGCCAAT TGTCGGACCT TCACCCTGCG CCAGGAAATC
GAGGCCCTGC ACCGGGCGGG CCTGGCGCGC GGCGGCTCGC TGGACAATGC GATCGTGGTG
GACGGCGCCA GCGTTCTGAA CCCGTCCGGC CTGCGCCGGC CCGACGAATT CGTCCGTCAC
AAGATGATCG ACGCGGTGGG TGACCTGTAC CTGGCCGGCG GCGCGATCAA CGGCCTGTTC
ACCGGCCACA AATCCGGCCA CGCGCTGAAC AACCGGCTGC TGCGCGCGCT GTTCGCCGAC
CGTGCGGCCT GGCGCATGCA CACCCGCGCG CAGCGTGCCC AGGCCGCACT GCGTGCGGCG
GCCTAG
|
|---|
| Protein sequence | MDGMLAIPGH DTVSSVGVSS GSAPSGATSS GSPAPARAAV RTARQHTLGN SISSIGVGLH
TGRRIRLTLH PAAENTGIVF RRTDLDDRTI PARFDHVVDT RLSTVIGDAT DPALRIATIE
HLMSALSGSG VDNVLIDVDG PEIPVFDGSA ADFIFLLDCA GLAEQAAPRT AIDVLRPVRV
TEGDAFAELR PGREGGLSLT LSIDFPAAAI GEQTFATRLD RQGYRAEIAN CRTFTLRQEI
EALHRAGLAR GGSLDNAIVV DGASVLNPSG LRRPDEFVRH KMIDAVGDLY LAGGAINGLF
TGHKSGHALN NRLLRALFAD RAAWRMHTRA QRAQAALRAA A
|
|---|
| |