| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_3089 |
|---|
| Symbol | |
|---|
| ID | 6976523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011365 |
|---|
| Strand | - |
|---|
| Start bp | 3382358 |
|---|
| End bp | 3384760 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643392597 |
|---|
| Product | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| Protein accession | YP_002277434 |
|---|
| Protein GI | 209545205 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.17686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.0332501 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTA AACAAGGGTT GCGGCCCGTG CTCGCGATCA CCGCTGTAGT CTATGCCTTG
GTCGGGCTGT ATCTGCTGGC GGGGGGCATC TGGCTGACCG CTCTGGGCGG ATCGCTCTAC
TACCTCATTG CCGGCGCTCT ACTGCTGGTG ACGGCAGTAC TGCTGCTGCG CCGCCGGCAG
GAGGCCCTAT GGGTCTACGC GGCCCTGCTG ATCGGCACCA TGGTCTGGGC CGTGGGTGAG
GTCGGGCTCG ATTTCTGGGC GCTGGCACCG CGCGGCGACA TCCTGGTTCC GCTGGGCATC
TGGCTGATGC TGCCGCCCAT CACCCGCAAC CTGGGCACGC GCGACCTGGC GCCGCCCAGC
CGGGCCGCCC AGGTGCCGCT AGGCCTGGCC GTGGGCGCGG CCGTGGTCGT GGTCGTCGCC
GCCCTGACGC AGGACCCGCA GGATATCGCG GGCAGCCTGC CCCAGGTCGC GCAGAACGCC
CCCACCCCGG GCGATGCCGG CGAAATCCCG GACGAGGACT GGCAGGCCTA CGGCCGCACC
GGCTTCGGCG ACCGGTTCAG CCCGCTGAAG CAGATCACGC CGGACAACGT GCATAACCTG
AAGGTGGCCT GGACCTTCCG CACCGGCGAT GTGAAGGGCC CGCACGATCC GGGCGAGTTC
ACGGACGAAA CGACGCCGAT CAAGATCCGC GACACAGTGT ACCTGTGCTC GCCGCACCAG
ATCCTGTTCG CGCTGGACGC CGCGACGGGC AAGCTGAAGT GGAAGTTCGA CCCCAAGCTG
ACCTATAACT CCACCTTCCA GCACATGACC TGCCGCGGCG TATCGTACCA CGAGACCGCG
CAGGGGGCCG AGACGATCGA CGGGGCGCAG GCGCCGGTCG ATTGCGGGCA CCGCATCTTC
CTGCCCACCA ATGACGGGCG CCTGTTCGCC CTGGACGCCG AAACCGGCGA ACGCTGCCAC
AATTTCGGCG ATGACGGCAT GGTGGACCTG AAGGCCGGCG AAGTCGTCAA GACGGCCGGC
TTCTTCGAAG CGACCTCGCC GCCGGTCGTC ACCGACAAGA TGGTGATCGT CTCCGGCGCG
GTGATGGACA ATTACTCGAC GCACGAACCC TCGGGCGTCA CGCGCGGCTT CGACGTCTAT
ACCGGCCGGC TGGTCTGGGT GTTCGACGCG GGCAATCCGG ACCCGAACGA AATGCCGTCC
GACACCCACC ATTTCGTCGG CAATTCGCCC AATTCGTGGA TCGTGTCGTC CTACGACCCC
AAGCTGAACC TGATCTTCAT CCCGATGGGC GTGCAGACGC CGGACATCTG GGGCGGCAAT
CGCGGGGCGG ACGCCGAACG CTATGCCAGC TCGATCCTGG CGCTGAACGC CGATACCGGC
AAGCTGGCCT GGTCGTACCA GACCGTGCAC CATGACCTTT GGGACATGGA CATCCCGGCC
CAGCCCAGCC TGGTGGACGT CCGCACCGCC GGCGGCGACA TCGTCCCCGC GCTGTACGCC
CCGGCCAAGA CCGGCAACAT CTTCGTCCTG GACCGCCGCA CCGGCACCCC GATCGTGCCG
GCGCCCGAAA CGCGGGTGCC CCAGGGCCCG GCCCCGGGCG ACCACCTTTC GCCCACGCAG
CCCTTCTCGG AGCTGACCTT CCGCCCCAAG AACAACCTGA CGGGCGCGGA CATGTGGGGC
GGCACCATGT TCGACCAGCT GATGTGCCGG ATCATGTTCC ACCAGCTTCG CTATGACGGG
CCGTTCACCC CGCCGTCGCT GCAGGGCACG CTGGTGTTCC CGGGCAACCT GGGCATGTTC
GAATGGGGCG GGCTGGCCGT CGATCCGGTG CGCCAGATCG CCATCGCCAA CCCGATCGCG
ATCCCGTTCG TCTCGCGCCT GATCCCGCGC GGCCCGAACA ACCCGGCGTC GCCCGACGCC
TCGCAGCCCT CGGGCTCGGA AACGGGGGTG CAGCCGATGT TCGGCGTGCC GTACGGCGTG
ACGCTCAGCC CGTTCCTGTC GCCGCTGGGC CTGCCGTGCA AGAAGCCGGC CTGGGGCTTC
ATGGCCGGGA TCGACCTGAA GACCAACACC ATCGTGTGGA TGCACCGCAA CGGCACGATC
CGCGACAGCG CGCCGCTGCC GATCCCCTTC AAGCTGGGCG TGCCCAGCCT GGGCGGACCG
CTGACGACGG CGGGTGGCGT GGCCTTCCTG ACCTCGACGG CGGATTTCTA TATCCGCGCG
TATGACGTCA CCACGGGCCG CCAGCTCTGG CAGGACCGCC TGCCGGCGGG TGGCCAGTCC
ACGCCGATGA CCTACGCCGT GGGTGGCCGC CAGTTCATCG TGACGGCCGA TGGCGGTCAC
GGGTCGTTCG GCACCAAGCT GGGCGATTAC GTGGTGGCCT ACGCCCTGCC CGAAGCCCAC
TGA
|
|---|
| Protein sequence | MNIKQGLRPV LAITAVVYAL VGLYLLAGGI WLTALGGSLY YLIAGALLLV TAVLLLRRRQ
EALWVYAALL IGTMVWAVGE VGLDFWALAP RGDILVPLGI WLMLPPITRN LGTRDLAPPS
RAAQVPLGLA VGAAVVVVVA ALTQDPQDIA GSLPQVAQNA PTPGDAGEIP DEDWQAYGRT
GFGDRFSPLK QITPDNVHNL KVAWTFRTGD VKGPHDPGEF TDETTPIKIR DTVYLCSPHQ
ILFALDAATG KLKWKFDPKL TYNSTFQHMT CRGVSYHETA QGAETIDGAQ APVDCGHRIF
LPTNDGRLFA LDAETGERCH NFGDDGMVDL KAGEVVKTAG FFEATSPPVV TDKMVIVSGA
VMDNYSTHEP SGVTRGFDVY TGRLVWVFDA GNPDPNEMPS DTHHFVGNSP NSWIVSSYDP
KLNLIFIPMG VQTPDIWGGN RGADAERYAS SILALNADTG KLAWSYQTVH HDLWDMDIPA
QPSLVDVRTA GGDIVPALYA PAKTGNIFVL DRRTGTPIVP APETRVPQGP APGDHLSPTQ
PFSELTFRPK NNLTGADMWG GTMFDQLMCR IMFHQLRYDG PFTPPSLQGT LVFPGNLGMF
EWGGLAVDPV RQIAIANPIA IPFVSRLIPR GPNNPASPDA SQPSGSETGV QPMFGVPYGV
TLSPFLSPLG LPCKKPAWGF MAGIDLKTNT IVWMHRNGTI RDSAPLPIPF KLGVPSLGGP
LTTAGGVAFL TSTADFYIRA YDVTTGRQLW QDRLPAGGQS TPMTYAVGGR QFIVTADGGH
GSFGTKLGDY VVAYALPEAH
|
|---|
| |