| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3959 |
|---|
| Symbol | |
|---|
| ID | 6780823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 4495702 |
|---|
| End bp | 4496901 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642769954 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002140747 |
|---|
| Protein GI | 197120320 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00121545 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCC CCGCAGATCT TCCCATCCGC GTCAAATTCT TCGGACTGAT GTCGCTACTT
TTAATCGCCC TCTTGCTGGC AAGCGGCCTC TTCATCTACA ACCGGCAGAA AGAATTCATC
ATCAGGTTCG CCGTCGACAA CGCCCGCAGC TTCGCCACCA CCGTAATAGA GACCCGCGAG
TACATGTCCT CCGTGGTCAG GGGGGAGCCT GAACAAAACT ACAACCTGGT GCCCCAGGTG
GTGGCCACAC AGGTCGCGAA AAGGGTCACC CAAAACAGCA AGTTCTACGT GCGCCAGGTC
TCGCTGCGCT ACCGCAACCC CGGCAACAAA CCGGACACCT ACGAGACAAA GCAACTGCAG
TACTTCATCA ACAACCCCAA GGCCGAGATC TACGACATCG TGCAAAGCGG CGAGATCAGC
CTCTTCCGTT ACCTGCAGCC GATGCGCGCC ACCGCCTCCT GCCTCGAATG CCACGGCAGC
TACGAAACCG CACCCGATTT CGTGAAGAAG CGCTTCCCCC CCGGCCACTA TTCCTACAAC
TACAAGGTGG GCGAGGTGAT CGGGGCGGTC TCGGTCAGCA TCCCGGTCAA GGACCTCTAC
GCCCAACTGG GTGCAAACCT CAAACTCGAC CTCCTCTTCC GTGGCATGGT CTACGTGATC
GTCATCCTGG TGATGGGATT CATCATGAGC CGCCAGATCC TAAACCCCAT CAAGCTCCTC
TCCGAACGCA TGATCTCGGT GACCCGCACC GGCAACTTCA AAGATAAGCT GCCGCAGAAA
ACCAGGGACG AAATCGGCAT GCTGATCGGT TCCTTCAACG AGATGATGGA CGAGCTCTCC
AGCCGCACCG TCCAGTCGAA GGAGGCGGAC GAGCGCTACC GCCGCTTCAT CGAGGTGGCC
GCCTCGGCGG TGATCACCTT CCTCAAGGAT GGCAAGATCG TCATCGCCAA CCAGAAAGCC
GAGTCCCTCT TCGGGCGCTC GCGGCAGGAA CTGCTGGGGG AATCGATCTT CGGCTTTCTG
GAGGAGGGGG CCGCGCTCAA GGACAGGCTT TCCACGCAGG CGGAGTTCCG GGACGAAGCC
TCCCGCCAGA TAGTCAACGG CGTCGGCGGG AAACGGACGG AGGTGGAAAT GGTGCTCTCC
GTTTCCAGGA CGGACCGGGA GCCGATGTTC ACCGCCATTC TCAGGGAGCG CAGGGGATAA
|
|---|
| Protein sequence | MTRPADLPIR VKFFGLMSLL LIALLLASGL FIYNRQKEFI IRFAVDNARS FATTVIETRE
YMSSVVRGEP EQNYNLVPQV VATQVAKRVT QNSKFYVRQV SLRYRNPGNK PDTYETKQLQ
YFINNPKAEI YDIVQSGEIS LFRYLQPMRA TASCLECHGS YETAPDFVKK RFPPGHYSYN
YKVGEVIGAV SVSIPVKDLY AQLGANLKLD LLFRGMVYVI VILVMGFIMS RQILNPIKLL
SERMISVTRT GNFKDKLPQK TRDEIGMLIG SFNEMMDELS SRTVQSKEAD ERYRRFIEVA
ASAVITFLKD GKIVIANQKA ESLFGRSRQE LLGESIFGFL EEGAALKDRL STQAEFRDEA
SRQIVNGVGG KRTEVEMVLS VSRTDREPMF TAILRERRG
|
|---|
| |