Gene Gbem_3842 details

Gene Information

• Locus tag: Gbem_3842
• ID: 6780706
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: -
• Start bp: 4379665
• End bp: 4381773
• Gene Length: 2109 bp
• Protein Length: 702 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 642769837
• Product: TPR repeat-containing protein
• Protein accession: YP_002140630
• Protein GI: 197120203

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTTTTG CCTTGCTCCC CGCTATGATC TACACGTTGC GCACACCCCG CCCAGGGCTC 
ACCCTGCTGC TCCTGCTCGT TGTCGCCTGC GCGCTCCCCG GCCGCGCGGA GGGAGAGCAG 
GAGAACCGTC TGCGCCGTAT CGCCGTCCGT CCCCACCAGG AATTCACCAG GATCAACCTC 
TATTTCCAGT CCCCTCCCGA TTACACGCTC AGGCTCTCTC CGGGACGGGT CCGCCTCGAG 
GTGAGGGGGG CCGACGCCCC GAGCTTCAGG AAGCTGCGCG GCTACGCGGA TGCCAGGCTC 
TCCGGCATCT TCACCGAGCT GCGAGCCGGG GTCCTGAGCG TCTCCATTCC GGTGCGCGAG 
TCGGAGCCGG GGGTACAGGC GGTTTCCTAC GGCAACCCTT CGGTCCTCTC GCTCGACATC 
GGGCCGGGGG TGAAGCGGGC AGGAAGGGTC GACATTGCGC CGGGGCGCGA GCCGATCCTC 
GCCGGGACCG AGCAGTTCGT GCGCGCCTTC GAATCGGATC CGGGAGGGGT TCCCTTCGCC 
CCCACCGACG CGAAGCTTTT GAAGGAGCTC TTCACCCCCG AGGAGCTGGC GCTCTTCCAG 
CAGGGGGAGA GCCTCCTTTA CGAGGAGCAG GCCGAGGCTG CTGCAGGGGT CTTCACCACC 
TTCCTGGGGA AGCCCCGGGG GGCGCGGGCG CTCGCCTTTT ACCGGCTCGG GGAGGCGCAG 
TTAGGGCTTG GGCGCGTCAA GGAGGCGCTG GACGCCTTCA AGCGGGGGGA GGCGGCCTGG 
CCGCAGTACC TGGAGCAGGC AGACGACATC CAGCAATCCT ACGCCGACGC CCTGGCCCGA 
AGCGGCGACT TCGCCGCCGG GCGCCGCAAG CTCCTGCAGC TCATGGACCG CTACGTCGGC 
ACCCCCTACC AGGCCGAGCT GATGAGCCGC CTGGCGGACC TGTCGCAGCG CCAGGGTAGG 
AAGCTTGCGG CGGCGGCCCT GTACCGAAGC GTCGTGGTGC ACGCGCCCGG TAGCGCCGCG 
GCGGCAAGGG CGCGGCTGAA GCTTGCCGAC CGTGAACTCT TCACCCTTTC CCGTGACCGT 
TACCGGGAAC TTCTGGCCAA GTACCAGGGG ATCTACCAGG CGCCGGGCGA CTTCGCCACG 
AGGGACGAGG CGCTCTTCAA GACGGCGCTT CTGCTGGCCC TTTACGCCCC CCCCCGGGAG 
GCGCTGGAGG CCGCCATCAG CTACGACCGG CGCTACCCGC GCGGCATCTT CAGCACTATC 
GTCAAGCAGA TGCGCGAGGA GCTGCTGCTC CCCTCCTACC GTGAGCTCGC CGCGTCAGGA 
AAGGACGAGG CCCTGGTGCA GCTCGCGCGG GAGAACCGTG AGCATCTCGC CCGGTGCTTC 
AGCGACCCCG CCTTCCCCGA GAGGCTCTCC CAGGCCTTCG ACCGTACCGG GAAGCTGACC 
CAGGAGATGG AGCTTTTCGG TTACCTGGAC GAGAAGAACT GGGCCGCGGC GGGCGCCGCG 
TTCATGCTCT CCCGCGTGGT GGACGATGCC GCCACCTTAG GGAACCAAGC GCAGGCTGAG 
GCGGTGGGGC GCAGGTTCCT GCAGCGCTTC CCGGCCGACG TGCGCGCCGC GAGGGTCAGG 
GAGCAGCTGG GGCGGATCGC CTTCGAGAAG GGGGACCTGC CGGCGGCGGG TGCTGAGCTT 
CGCTTCCTCG CCACCAAGGG AGGGAAGGCG CAGTTTCCCG ACAGCGACTA TTATCTCGGC 
AAGGCGCAGC TGGCCGCCGG CGACCACAGG GGCGCGGTGA GGAGCCTCGC CCGGTTCACC 
CAGAACGTGA GGGAGGACTC GGCGCTTCTT CCCGACGGCT ACTTCACCCT GGCCGGGGCG 
CTTGCCGCCT GCAAGGATTA CGACGGGGCG CTGGCGGCCT GCGAGGTCGG GGGTAGGGTC 
GTAGCCGGAG AGGGCGCCGC GCAGTTCAAG TACAAGGCCG GCGAACTCTT CCTGCAGCGG 
GGGGAGGTGG CCAAGGCTCA AGCGAGCTGG GAGAAGGCGG CAGCTTCCGG GGGGACCTGG 
GGGAAACTTG CCGGCGAGGC GCTTGCTGAC CTCAAGTGGC GCATGAAGAT CTCCAAGGAG 
CTCCCCTGA 

 

Protein sequence

MPFALLPAMI YTLRTPRPGL TLLLLLVVAC ALPGRAEGEQ ENRLRRIAVR PHQEFTRINL 
YFQSPPDYTL RLSPGRVRLE VRGADAPSFR KLRGYADARL SGIFTELRAG VLSVSIPVRE 
SEPGVQAVSY GNPSVLSLDI GPGVKRAGRV DIAPGREPIL AGTEQFVRAF ESDPGGVPFA 
PTDAKLLKEL FTPEELALFQ QGESLLYEEQ AEAAAGVFTT FLGKPRGARA LAFYRLGEAQ 
LGLGRVKEAL DAFKRGEAAW PQYLEQADDI QQSYADALAR SGDFAAGRRK LLQLMDRYVG 
TPYQAELMSR LADLSQRQGR KLAAAALYRS VVVHAPGSAA AARARLKLAD RELFTLSRDR 
YRELLAKYQG IYQAPGDFAT RDEALFKTAL LLALYAPPRE ALEAAISYDR RYPRGIFSTI 
VKQMREELLL PSYRELAASG KDEALVQLAR ENREHLARCF SDPAFPERLS QAFDRTGKLT 
QEMELFGYLD EKNWAAAGAA FMLSRVVDDA ATLGNQAQAE AVGRRFLQRF PADVRAARVR 
EQLGRIAFEK GDLPAAGAEL RFLATKGGKA QFPDSDYYLG KAQLAAGDHR GAVRSLARFT 
QNVREDSALL PDGYFTLAGA LAACKDYDGA LAACEVGGRV VAGEGAAQFK YKAGELFLQR 
GEVAKAQASW EKAAASGGTW GKLAGEALAD LKWRMKISKE LP