| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3694 |
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| Symbol | |
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| ID | 6780558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 4220856 |
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| End bp | 4222610 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642769689 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD family |
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| Protein accession | YP_002140482 |
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| Protein GI | 197120055 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGA AAAGCATGGA CGAAGTGAAG CAGCTCATCG ACCTGGGCAA GGAAAAGGGG
TTTCTCACCT ACGAAGAGGT GAACGACCTG CTTCCCCCTG ACATCGTCTC CTCCGACCAG
ATAGACGACG TCATGAGCAT GTTTGGCGAT ATGGACATCG AGATAGTCGA CTCCGCCCAG
AAGGTAAAGA TCCCGAAGAT CAAGATGGAT CTGGAAGAAG AGGAAGAGCA CGAAGGAAGT
GAGGAAGAAG TCGAGTTCGA GCCCGGCACC CTCGGCCGTA CCAGCGACCC GGTCCGCATG
TACCTGCGCG AGATGGGTTC CGTTTCGCTT CTCACCCGTG AGGGAGAGGT CGAGATCGCC
AAGAGGATCG AGGTGGGCGA GCGCGACGTC GCCAGCGTCA TCCTGAACAC TCCGATCACG
GTGAGAGAGG TCGTCTCCCT TGGCGAGCGT CTCAGGAAGC AGCAGATCGG CGCCATCGAG
ATATCCAAAG ACGTCGAGGA AGAGGTGCTG GAGGAAGGGG AAGAGGATCT CCAGGCCCTC
AAGGTGCTCA CCATCATCGA CGAGATCAAG GAAATCGATC TGCGGATGAA CGAGATCCAG
GGTGTTCTGG ACAACGAGAA GGCTGCCGCA AAGGAGCGCG AGGCCCTGGG TGCCGAGCAC
GCCGAACTCA AGGTGAAGAT GGCGGAGACA CTCAAGTCGC TGCGCCTGAA GGACCGCCAC
ATCGAGAAGA TTGCCCAGCG CCTGAAGGAG CTTTCCTGCA AAGTCGATAC GGTGATGCAG
GAGATCACCG AGCTGGAGAA AGAAAGCGGC GCCGAGAGGG AGCCTTTTCT TGCCGCCTTC
GAAGGGGCGA AGGGCGGTTC CGAGGCGGAG TTCCAGAAGA AGCTGAACCT GACGCTGGAG
GAAGGGCAGA AGCTCGAGAA GCGCTTCCGC TCCAGCGAAG CTAGATTGAA GAAGATCGAG
CAGGAGTCCG GCTTCAAGGC GAGCGAACTC GCCAACGCCC TGCTCGCCAT CGAAGAAGGG
GAGCACAAGG CGAAGCTGGC CAAGAGCGAA CTGGTCGAGG CCAACCTCCG CCTGGTCGTC
TCCATCGCCA AGAAGTACAC CAACCGCGGT CTGCAGTTCC TGGACCTGAT CCAGGAAGGG
AACATCGGCC TCATGAAGGC TGTGGACAAA TTCGAGTACC AGCGCGGTTA CAAGTTCTCG
ACCTACGCCA CCTGGTGGAT CCGTCAGGCC ATCACCCGCG CCATCGCGGA CCAGGCCCGT
ACCATCAGGA TCCCGGTGCA CATGATCGAG ACCATCAACA AGCTGATCCG TACCAGCCGC
CAGCTGGTGC AGGAGATCGG CCGCGAGCCT TCCCCCGAGG AGATCGCCGA GCGCATGGCG
CTGCCGCTGG ACAAGGTGCG CAAGGTTCTC AAAATCGCCA AGGAGCCGAT CTCGCTGGAG
ACCCCGATCG GCGAGGAAGA AGATTCGCAT CTTGGGGATT TCATCGAGGA CAAGGGTGTG
GTCTCTCCCC TGGAAGCGGT GATCAAGGCG AACCTTTCCG AGCAGACCTC CCGGGTGCTC
TCCACCCTCA CCCCCCGCGA GGAGAAGGTG CTCCGGATGC GCTTCGGCAT CGGCGAGAAG
AGCGACCATA CCCTCGAAGA GGTGGGCCAG GACTTCGAGG TCACGCGTGA AAGGATCCGG
CAGATCGAGG CGAAGGCGCT CAGGAAGCTG CGCCACCCCA GCCGGGCTAA GAAGCTGAAA
AGCTTCGTAG AGTAA
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| Protein sequence | MAKKSMDEVK QLIDLGKEKG FLTYEEVNDL LPPDIVSSDQ IDDVMSMFGD MDIEIVDSAQ
KVKIPKIKMD LEEEEEHEGS EEEVEFEPGT LGRTSDPVRM YLREMGSVSL LTREGEVEIA
KRIEVGERDV ASVILNTPIT VREVVSLGER LRKQQIGAIE ISKDVEEEVL EEGEEDLQAL
KVLTIIDEIK EIDLRMNEIQ GVLDNEKAAA KEREALGAEH AELKVKMAET LKSLRLKDRH
IEKIAQRLKE LSCKVDTVMQ EITELEKESG AEREPFLAAF EGAKGGSEAE FQKKLNLTLE
EGQKLEKRFR SSEARLKKIE QESGFKASEL ANALLAIEEG EHKAKLAKSE LVEANLRLVV
SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYQRGYKFS TYATWWIRQA ITRAIADQAR
TIRIPVHMIE TINKLIRTSR QLVQEIGREP SPEEIAERMA LPLDKVRKVL KIAKEPISLE
TPIGEEEDSH LGDFIEDKGV VSPLEAVIKA NLSEQTSRVL STLTPREEKV LRMRFGIGEK
SDHTLEEVGQ DFEVTRERIR QIEAKALRKL RHPSRAKKLK SFVE
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