Gene Gbem_2821 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_2821 
Symbol 
ID6782820 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp3247293 
End bp3248864 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content61% 
IMG OID642768815 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_002139621 
Protein GI197119194 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTCGCG TCGGAATACG CAGACTTTTC AGCTGGATAG GGGGGCTCTC CCCCGCCGCC 
ATCAGCTCCA TCTTCGCCTT CAGCAGCCTC TCTTGGCTTC TTCTTGCCCA CCTTCTCTTC
CGTAGCATAT TTGTAGACCG CGAACTCACC TACCTCGCCC TTAGCATCCT CGAGCTTTTC
GGGGTCGCCA CCATGACCGT CATCGTCTAT CTGCTCAGCG ACAAGAGCGA AGCAAGGCAT
CGGGCCATCG AGTCGAGCAT CCGCGAGCAG GCCATACGCG ACGGGCTCAC CGGGCTCTAC
AACCGGCAGG CTTTCGACGA TTTCCTGGCG CAGTCCATCG AATACGTCAA ACGCCGCAGG
GAGTCTGTCG CCCTGTTGTT TCTCGACCTG GACCGGTTCA AATTCGTCAA CGACAGGCGT
GGGCATTTCG TGGGAGACGC GGTCCTAATC GAGACAGCGC GACGGCTCAC CGACTGCGCC
AAACGCGGAG AAGACCTGGT GGCCCGGGTG GGGGGGGACG AGTTCGCCAT GCTGCTGCGC
CACCCCGATA TGCCGGACGG GCCGGGGGTT GTCGCCAGGC GTGTGCTGGA GTCGTTGTCG
GCGCCGGTGC AGGTGGATGG CGAGACGCTG AAGACCAGCG TCAGCATCGG CATCGCCATG
TTTCCTTCCG ACGCTGACGA TCCCATGCAG CTCTTCAAGA TGGCCGATTT CGCCCTGAAC
CAGGCGAAGC AGCAGGGACG CGCGACCTTC TGCTTCTATG GCGGCGAATG GCGGGAAGAG
CGCGACCATA CCCTGCAGTT GGAACAGGGG CTCTTGCGTG CCATCAACTA CGACGAGTTG
TTCCTGGTTT ACCAGCCCAA GCTGGATACC TCCAACATGC GCGTCATCGG AGTTGAGGCA
CTGGTGCGCT GGAAGCACCC GCACTTGGGA GTGCTCGGGC CGGCGAGCTT CGTCCCCGTG
GCCGAGAAGG CTGGCCTCAT CTGGCCGCTG ACCGAGTGGG TGCTGAAGAA TGCCTGTTCC
CAGGCGGCGC GCTGGTACCG CAACGAGGGG CTGGACCTGA ACGTCGCCGT CAACCTCTCC
CCTTCCGTTT TCTCGCATCA GGACCTGGAA GAGGTGATCG AGAAGGCGCT GAACGACAGC
AAACTCCCCC CGGACCGGCT CACGCTCGAG ATCACGGAGC AGTCGCTGAT GATCTACGAG
ACGGAGGCGC TCGGGGTGCT GGAGCGCCTG CAGCGGATGG GAACCAACAT CCAGATAGAC
GACTTCGGCA CCGGCTACTC GTCCCTCTCT TCTCTCAAGC ACTACCACTT CCAGGCGCTC
AAGATAGACA AGTCCTTCGT CAGCGACGTC GTCACCTCTT CGGACGACGC CGCCATCGCC
ACCACCATCA TGTTCATGTC CAAATGCCTT GACATGGAGG CCATCGCAGA AGGGGTGGAA
TCCGAGGCGC AAAAGGAATT CCTCTCCTCC ATCGACTGCC GCTACATGCA GGGTTTCTAT
TTCTCCCGCC CCCTCGTCGC CTCTGAAATG GCCGATTTCA TCAGGCATCT CGCCGACGAC
AAGAAAGCTT GA
 
Protein sequence
MGRVGIRRLF SWIGGLSPAA ISSIFAFSSL SWLLLAHLLF RSIFVDRELT YLALSILELF 
GVATMTVIVY LLSDKSEARH RAIESSIREQ AIRDGLTGLY NRQAFDDFLA QSIEYVKRRR
ESVALLFLDL DRFKFVNDRR GHFVGDAVLI ETARRLTDCA KRGEDLVARV GGDEFAMLLR
HPDMPDGPGV VARRVLESLS APVQVDGETL KTSVSIGIAM FPSDADDPMQ LFKMADFALN
QAKQQGRATF CFYGGEWREE RDHTLQLEQG LLRAINYDEL FLVYQPKLDT SNMRVIGVEA
LVRWKHPHLG VLGPASFVPV AEKAGLIWPL TEWVLKNACS QAARWYRNEG LDLNVAVNLS
PSVFSHQDLE EVIEKALNDS KLPPDRLTLE ITEQSLMIYE TEALGVLERL QRMGTNIQID
DFGTGYSSLS SLKHYHFQAL KIDKSFVSDV VTSSDDAAIA TTIMFMSKCL DMEAIAEGVE
SEAQKEFLSS IDCRYMQGFY FSRPLVASEM ADFIRHLADD KKA