| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2073 |
|---|
| Symbol | aksA |
|---|
| ID | 6782067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2395846 |
|---|
| End bp | 2396994 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642768068 |
|---|
| Product | trans-homoaconitate synthase |
|---|
| Protein accession | YP_002138882 |
|---|
| Protein GI | 197118455 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGAG TTACCAAATC CCAGGTTTTC ATCGGCGACA CCACGCTGCG AGACGGCGAA
CAGACGGCAG GGGTGGTCTT TACCGTAAAG GAAAAGATCT CCATCGCGAG GCAGTTGGAC
GCCATGGGCG TCCACGAACT GGAATGCGGC ATACCCGCCA TGGGCGAGGA GGAGCGCGAC
TCGATCCGGG CGCTGGTGGC GTTGGGCCTT TCGGCCCGGC TCATCACCTG GAACCGCGCG
GTGGTGCCGG ACATCGAGGC GAGCATCGCC TGCGGCGTCG AAGCCGTGGA CATCTCGCTC
AGCGTCTCGG ACATCATGAT CGAACACAAG ATCAACAAGA GCAGGGATTT TGTGAAGGAA
CAGCTGAAGC GGGCCCTATG CTTCGCCAAG CAGAACGGAC TCTACGTCTG CGTCGGGGGC
GAGGACGCCA GCCGCGCCGA CAGCGATTTC CTGATCGAGT TGATGCAGAT CGCCCAAACA
AACGGCGCCG ATCGTTTCCG GTTCTGCGAC ACGCTCGGCA TCCTCGACCC CTTCGCCATG
TTCGAAAAAG TGGGTCGCCT GAGAGCCGCG GTCCCCGGAC TCGACATCGA GGTGCACACC
CACAACGACC TGGGGCTCGC CACGGCGAAC GCCCTGGCCG GGGTGAGGGG AGGGGCGTCC
TACATCAGCA CCACGGTCAA CGGCCTCGGC GAGCGGGCAG GCAACGCCGC ATTGGAAGAG
GTGGTCATGG CGCTGAAGGT CGCCTGCGGC ATTGACGTCG GCATCGACAC CAGGCGCTTT
CAGTCGGTGT CCCGGCTGGT GGGGCGCGCC TCCAACCGCG AGGTCCCACC CTGGAAGGCT
GTTGTGGGCG AGCGGGTCTT CTCCCACGAG TCGGGGTTGC ATGCCGATGG CGTGCTGAAG
GACCCGAAGA ACTACGAGGG CTTCACGCCT GAGGAAGTGG GGCTGAAAAG GCACATCGTG
GCGGGAAAGC ATTCCGGGAC CAACGGGATC GTGGAAAGCT ACCGTCAGAT CGGCATTCCC
ATCTCCAGGG AAGAGGCGCA GGAACTGATG GACAAGGTGA GGAGCACCGC GCAGCGCATC
AAGGGGCCCC TGGCGCCCAT GGACCTGGTC AAGCTGCACA AGCGGAGAGG GGTTTCGCTG
GCGGCCTAG
|
|---|
| Protein sequence | MAGVTKSQVF IGDTTLRDGE QTAGVVFTVK EKISIARQLD AMGVHELECG IPAMGEEERD
SIRALVALGL SARLITWNRA VVPDIEASIA CGVEAVDISL SVSDIMIEHK INKSRDFVKE
QLKRALCFAK QNGLYVCVGG EDASRADSDF LIELMQIAQT NGADRFRFCD TLGILDPFAM
FEKVGRLRAA VPGLDIEVHT HNDLGLATAN ALAGVRGGAS YISTTVNGLG ERAGNAALEE
VVMALKVACG IDVGIDTRRF QSVSRLVGRA SNREVPPWKA VVGERVFSHE SGLHADGVLK
DPKNYEGFTP EEVGLKRHIV AGKHSGTNGI VESYRQIGIP ISREEAQELM DKVRSTAQRI
KGPLAPMDLV KLHKRRGVSL AA
|
|---|
| |