| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1855 |
|---|
| Symbol | |
|---|
| ID | 6781844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2149563 |
|---|
| End bp | 2151155 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642767846 |
|---|
| Product | GH3 auxin-responsive protein |
|---|
| Protein accession | YP_002138665 |
|---|
| Protein GI | 197118238 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTCA GCGATACCCT GAAGGCCGCC GCAGTTCCGG TTTTCGACCG CCTGGTCAAG
GCGGGCGCCG CATTGCACGC TTCGCGTCTG GCCGGCAGCG ACTCCGTCGC CGCGCAGCGG
CGCATCTTCA GCCGCCTGCT GGCGCGCGGG GCCTCGACCA GGTTCGGCGC GGATTACGGG
CTGTCCGAAC TCGCCTCTTT GCCCTTCGCG CAAGCCTATG ACCTGTTCCG CTCCCGCGTG
CCGGTGCGCA GCTACGAGGA GTTCTGGAAC GACTACTTCC GTTACGGCGC CCGCGAGTCG
GGCGGCAGGG TGACTCTGGC GCTTGAAAAC GTCACCTGGC CGGGGAGGGT CCCCTTTTTC
TGCGAGACCT CCGGTACCAC GGCCCCCAGC AAGTTCATAC CCTTCACCAC GGAGATGTTC
GCTGCCAACC GGCGCGCCGC CCTGGACCTG ACCTCCTGCT ATCTGGGCGC GAACCGCCGC
AGCAGGCTCA TGGAAGGTAA ATTCCTGTAT CTGGCCGGCA ACACCGAGCT TACCGACCGG
GGCGAAGGGG TCTTAAGCGG CGACATGAGC GCGATAACTC TGCGCTACCG CCCTTCCTAC
CTGAAACCTT TCATAGCGCC CGATGCGGCG ACCGCGAGGC TCCCCTGGGA GGAAAAAGTG
GAGCGGCTGG CGGAGCTTTT GCTGCGGGAT ACGTCGATAC GCGGCATCTC CGGCGTTCCC
CCCTGGATAC TGCTGCTGCT GAACCGCTGC CGGGAGCTCG GTGGAGCGCC GCTGGCCACG
CTGCTGCCGA ACCTGGAACT GATCGTGCAC GGCGGCACCA GCATGAAGCC GTACCTGCAG
GAGTTCGAGC AGCTCTTCCC GGCCAGCGCT CCCAAATTCC TGGAAGTGCT TCCCTCCTCG
GAGGCCTTCA TGGCTTTCCA GCGGCCGGGC GAGAACCGGA TGCGGCTGAC CCCCTACTAC
GGCGCCTTCT TCGAATTCGC GCCGTGCGAC GAGTTGGAGG GGGGGCGGCC GGCGCCGGAC
GCCCGCTGCG TGCCGCTGGA GGAGGTGGAG GTCGGGCGCC GCTATGCCGT GATCCTGACC
ACCTGCGCCG GGCTTTGGCG CTACCATATC GGCGACACCC TGCGCTGCAC CGATCGGGAA
CACCTCTTCA TCGAGTTCAC CGGGAGGGAC CGTTTCCTGG ACCGGTTCGA GGAGAAGGTG
ACCCAGGGGG AAGTCGAGGA GGCGGTCGCC CGGCTCAACC TGATGCCGGG GGTGGAGATC
CGGGAGTTCA TGGTCGGTCC CCAGATCGGG AGCCGCCGCC ACCTCTGGGT CCTCGCCTTG
GCCGCCGGCT CGACCTTGTC CGCCGAGATG CTGGCCGGGC ACCTGGACGC TTCGCTGAAC
GGCATGAACG CCGATTACCG CACCTTCCGC GAACAGGGAC GGATCAAGCC TCCCCTGGTT
CTGACGGTGC CCGAGGGGGA GATCTACCGC TGGTCCAAGG AGGTGCGGGG GAAACTTGGG
GGGCAGAGCA AGATCCCCCA TGTGGATCCG ACCCTGGAGG GGGATCTGGT CGCGAGCCTG
GCGCGCTACT GCGGGGCTGG CGGCGCACGG TAA
|
|---|
| Protein sequence | MMFSDTLKAA AVPVFDRLVK AGAALHASRL AGSDSVAAQR RIFSRLLARG ASTRFGADYG
LSELASLPFA QAYDLFRSRV PVRSYEEFWN DYFRYGARES GGRVTLALEN VTWPGRVPFF
CETSGTTAPS KFIPFTTEMF AANRRAALDL TSCYLGANRR SRLMEGKFLY LAGNTELTDR
GEGVLSGDMS AITLRYRPSY LKPFIAPDAA TARLPWEEKV ERLAELLLRD TSIRGISGVP
PWILLLLNRC RELGGAPLAT LLPNLELIVH GGTSMKPYLQ EFEQLFPASA PKFLEVLPSS
EAFMAFQRPG ENRMRLTPYY GAFFEFAPCD ELEGGRPAPD ARCVPLEEVE VGRRYAVILT
TCAGLWRYHI GDTLRCTDRE HLFIEFTGRD RFLDRFEEKV TQGEVEEAVA RLNLMPGVEI
REFMVGPQIG SRRHLWVLAL AAGSTLSAEM LAGHLDASLN GMNADYRTFR EQGRIKPPLV
LTVPEGEIYR WSKEVRGKLG GQSKIPHVDP TLEGDLVASL ARYCGAGGAR
|
|---|
| |