| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1550 |
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| Symbol | |
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| ID | 6781538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 1795296 |
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| End bp | 1798136 |
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| Gene Length | 2841 bp |
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| Protein Length | 946 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642767544 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_002138364 |
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| Protein GI | 197117937 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGGT ACCAGTGCAG AATTCTATGT CATGCCGTGG CACTCATCGT TTTGTTGACC
ATTTCCGCCG GATGCGTGAA ACGGATGACC GCTGCGAACG AGCCTGCCCA GGCAGAGGCC
TCCGCCTTTG CGACACTCAA GTCGGTCACG GTGTCGGCCG ACGCCACCAG CGTGGAGCTG
GTCAGCGACA AGCCGATCAC CTATACCTCC TATAAGGGGG GCGATCCGAC CCAGATCATC
GTCGACATCT CCCAAACCGA GCCGGGGGCT GTGACTTCTC CCATCGAGGT GAACCGCGGC
AACATCAAGC AGATTGAGGT CGAGCGCCAA CCTTTGGGCG GGAGCGTGCT GACGCATCTA
AGGCTCGTCC TGACTAAGGA CGTCGACTTC GCGGTCGCCA CCGACCCCTC GGACAAGAGC
AGGCTCAAGA TCTATCTCCC GGTAGTGGAG CCCGAGGCGA AGGCCGAGCC GGCCGAAGTC
AAGGAAGCCG CGCTTTCCGA GAGCAGGATC GACGAGAAGA CTCTTTCGCC GGCCGCAGCT
GCCGCGCCCG CCGTTGAGGC CAGCGCTCCC ATCAAGGCGG AAGCCATGGC GGCACAGACC
GCCGCGCCTG CCGCGGTGCC CAAGGCAACA ACCGCAGCTG TCGCACAACC GAAAGCTGGT
GCCGCCCCCG AGAAGAGTGG CGGCGCAGAG GGGGGACGCG GTCTCAACGC CGTGATCACC
GGGGCGGACG GTGTTGATCT CTCCATCCAG GGGGGGGTGC AGACCTTCAA CTCCTTCAAG
TTGATCAAAC CTGACCGCAT CGTCCTCGAC CTCTTCAAGG TCAAGAACTC GCTTCCCCAG
AACGTGGTGC CTGTCAACGC CTTCGGCATC GCCAACGCCC GGGTGGGGTC GACCCCAGAT
AAGGTGCGCG TGGTGCTGGA TGCAGCGGGG GACAGCCTCC CTCCGTACGA GGTGGTCAAG
AGCGACCTCG GGGTGAAGAT CAGGCTCAAG GGAAAGACCC CGGCCATCGC CAAGGCTCCG
GCTGTTGAAG CCCCGGCAGC GGCGGCCGCC CCGGCTCCGG CTCCGGCAAC ACGCCCCGCC
CCGGCTCCGG CTCCGGCAAC ACGCCCCGTC CCGGCGCCGG CAGCAGCGAA GCTGAAGTCC
GAGGTTCCCC ACTCCCGCCA GACCAAGGGG GCGCTGGAAG GGATCGAGTT CAAGGTGGTC
GACGGCGTTT CCCGCGTCTC CATGAAGCTC TTCGGGACCT GCGAGCCCGG ACAGCCGTTG
CGCGGGCCCC ACGGGGTAAC GCTCAGCATC GCCAACTGCC AGGTACCAAA ACAACTGCAG
CGCGCGCTCG ACACCACCCA GTTCGGCACA CCGGTGCTCT CGGTAACGCC TTACCAGGTG
AAGGTAAAGG GGAGCACCGT TACCAAGGTC CTGGTTAAGC TGCGCGGCAA CCCCGAATTC
AGCACCAGCC GCAAGGGAGA TCTGCTCCTT TGGGACTTCG TGAACCCGGG TCCGGTAGCG
GCTCCCAAGC TCCCTGCCGC ACCGCCTGCT CCCAAGGCCA GGGCCAAGGC TTCTGCCGAG
CCCAGGGTCG CCGAGGAACT GACCCCGACG CCGGCGCGTA CCAGCGACGA CATGGCGGTT
CAGCTTCCCA GCGATCGCCC GGCCAAGAAG GTCTACACGG GGAGGAGGGT GACCCTCGAA
TTCTCCGACG CCGATGTGAG GAAGATCTTC CAGTTGATCG CCGAAGTAAG CAACCTGAAC
TTCCTCATCG CCGATGACGT CACCGGGACC ATCAGCATAA AGCTGGTAAA CGTACCATGG
GACCAGGCCC TCGACGTGAT CCTCGATGCC AAAGGGCTTG CCATGGTGCG CGAGGGGAAC
ATCGTTCAGA TCAAGCCCAG ATCCAAGATG CAGAACCAGG CCGACGAGGA ACTCGCTGCG
AAGAAAGCGG CTGAGCGTCT GATGGAACTG AAGACCATGG TGTTCGAGGT GAACTACGCC
TCGGTGAACG ACGTGGCGAT GCAGTTCGGC ATGCTCAAGA GCGATCGCGG CGTCATCACC
AAGGACGAGC GCACCAGCCG CGTGATCGTA AAGGACATCC AGACCGCTCT CAACGACATG
AAGGCGCTCC TGAAAACGTT AGACGCCCCC GAGAAACAGG TGATGATCGA GGCCCGCATC
GTCGAAGCCA CCTCGACTTT CACCCGCGAC TTGGGCGTGC AGTGGGGGCT TAGCTACCGC
GACGGCTCCG CTTCGGTTGC TGGCATCAAC TCGGTAGACA CCGGTTTCGG CGGAGTTGTT
TCAGCGGCCG GGCCGGGCTC CTCTGGTGCA GGCGGACTCG GGCTCGGCAT GTCCTTTGGC
AAGCTGACCA GCAACATCAA ACTCGACATG AGGCTTGCCG CGGCCGCGAC CATCGGGCAG
GTGAAGATCA TCTCCACCCC GAAAGTCGTC ACTCTGAACA ACAAGGCCGC GAAGATCTCA
CAGGGGCAGT CCATACCATA CCAGACCACC TCAGCCGAAG GAACCAAGAC CGAATTCGTC
GAAGCCGCCC TGACCCTCGA GGTAACCCCG CACATTACCG CGGACGGCTC GGTCAGCATG
AAGATCAAGG CTAGCAACAA CTCGCCCGGC ACCGGGTCGC CCCCTCCCAT CAACAAGAAG
GAGGCGACCA CCGAACTGGT GGTGTCCAAC GGCGACACCA CGGTCATCGG TGGCATCTAT
GTCGACAGCG ACACCGAGTC CGATACCGGG GTCCCGTTTC TTTCGGACAT TCCGCTTTTG
GGTTGGCTCT TTAAATCCAA CTCCAAGCAG AAGACCAAGA CCGAACTGCT GATTTTTATT
ACGCCTAAGA TAGTTCTTTA A
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| Protein sequence | MTRYQCRILC HAVALIVLLT ISAGCVKRMT AANEPAQAEA SAFATLKSVT VSADATSVEL
VSDKPITYTS YKGGDPTQII VDISQTEPGA VTSPIEVNRG NIKQIEVERQ PLGGSVLTHL
RLVLTKDVDF AVATDPSDKS RLKIYLPVVE PEAKAEPAEV KEAALSESRI DEKTLSPAAA
AAPAVEASAP IKAEAMAAQT AAPAAVPKAT TAAVAQPKAG AAPEKSGGAE GGRGLNAVIT
GADGVDLSIQ GGVQTFNSFK LIKPDRIVLD LFKVKNSLPQ NVVPVNAFGI ANARVGSTPD
KVRVVLDAAG DSLPPYEVVK SDLGVKIRLK GKTPAIAKAP AVEAPAAAAA PAPAPATRPA
PAPAPATRPV PAPAAAKLKS EVPHSRQTKG ALEGIEFKVV DGVSRVSMKL FGTCEPGQPL
RGPHGVTLSI ANCQVPKQLQ RALDTTQFGT PVLSVTPYQV KVKGSTVTKV LVKLRGNPEF
STSRKGDLLL WDFVNPGPVA APKLPAAPPA PKARAKASAE PRVAEELTPT PARTSDDMAV
QLPSDRPAKK VYTGRRVTLE FSDADVRKIF QLIAEVSNLN FLIADDVTGT ISIKLVNVPW
DQALDVILDA KGLAMVREGN IVQIKPRSKM QNQADEELAA KKAAERLMEL KTMVFEVNYA
SVNDVAMQFG MLKSDRGVIT KDERTSRVIV KDIQTALNDM KALLKTLDAP EKQVMIEARI
VEATSTFTRD LGVQWGLSYR DGSASVAGIN SVDTGFGGVV SAAGPGSSGA GGLGLGMSFG
KLTSNIKLDM RLAAAATIGQ VKIISTPKVV TLNNKAAKIS QGQSIPYQTT SAEGTKTEFV
EAALTLEVTP HITADGSVSM KIKASNNSPG TGSPPPINKK EATTELVVSN GDTTVIGGIY
VDSDTESDTG VPFLSDIPLL GWLFKSNSKQ KTKTELLIFI TPKIVL
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