| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1452 |
|---|
| Symbol | |
|---|
| ID | 6781439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1678569 |
|---|
| End bp | 1679726 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642767445 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_002138266 |
|---|
| Protein GI | 197117839 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.182451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTTCG GGCTGACGGA TGAACAAAAG ATGATGCAGG ATATGGCGAG GGATTTCGCG
CAGAAAGAGA TCCTGCCTAC GCTCAAGGAA GACGAGATCA ACCACACCTT CCGCCCCGAA
CTGGTCAAGA AGATGGCCGG TCTGGGCTTT TTCGGCTGCG CCCTTCCTGA GGAATACGGC
GGCAACGGCT GCGGCTTTTT GGAGTCGGTC ATCCTTGCCG AACAGCTCGC CACCGTGAGC
GGCTCCTCAA GGCTGCCGCT GAACATGCAG AACATAGGCC CCTCCCTCAC GGTCAACAAG
TTCGGCACCA AGGAGCAGAA AGAGCGTTTC ATCCCCGACT GGGTGAGCGC CGAATCCTTC
GGCTTCTTCG CCATCACCGA GCCCAACTCC GGCTCCGACG TAGTGAGCAT GGGGACCACC
GCCACCGACC GCGGCGACCA CTGGGAGATC AACGGCCAGA AGATGTGGAT CTCCAACGCC
CACGTAGGCG ACTGGGGCCT TCTCTACGCC GTCACCGACC GCGCCGCCAA GCACAAGGGG
ATGACCTGCT TCGTCATCAA CCTCAAGGGT AACGAGGGGA TCATCACCGC CGCCATCGAG
TCCAAAGTGG GCCTTCACTG CGCGCCTACC GGCGAGATCT CATTCAACCA GGCGAAGATC
CCCAAAGACT CGGTCCTGGG CGAGGTGGGG CAGGGCTTCC AGATCTGCAT GTGGCAGCTG
AACAACACCC GTATCAGCTG TGCCGCGGGC GCGCTCGGCA TCGGCGCCGG CGCCATCGAG
GCCGCCATCG GCTACGCCAA CGAGAGGACC CAGTTCGGCA AGAAGATCGG CTCGTACCAG
ATGATCCAGG CTTCCATCGC CGAGATGGTG GCCGAGCACG AAGCGGCGCG CCTTCTGGTC
TACCAGGCGG CCTGGCTCAA GGACCAGGGG CTTCCCAACC AGTACCAGAC CTCCATGGCG
AAGCTGTTCG CCTCCGAGGC GGCGGTACAC GCGGCCACCG AAACCATGAA GATCTTCGGG
AGCTACGGCT TCTCCACAGA GTACCCGGCC GAGCGCTGGC TGCGCGACTC GATGTCGCTT
AGGACCGTGG AAGGGACCAG CAACATCCAG AAGACCATCA TCGCCGGCTT CGCCCTGGGC
GACGCGGTGA ACCGCTAG
|
|---|
| Protein sequence | MRFGLTDEQK MMQDMARDFA QKEILPTLKE DEINHTFRPE LVKKMAGLGF FGCALPEEYG
GNGCGFLESV ILAEQLATVS GSSRLPLNMQ NIGPSLTVNK FGTKEQKERF IPDWVSAESF
GFFAITEPNS GSDVVSMGTT ATDRGDHWEI NGQKMWISNA HVGDWGLLYA VTDRAAKHKG
MTCFVINLKG NEGIITAAIE SKVGLHCAPT GEISFNQAKI PKDSVLGEVG QGFQICMWQL
NNTRISCAAG ALGIGAGAIE AAIGYANERT QFGKKIGSYQ MIQASIAEMV AEHEAARLLV
YQAAWLKDQG LPNQYQTSMA KLFASEAAVH AATETMKIFG SYGFSTEYPA ERWLRDSMSL
RTVEGTSNIQ KTIIAGFALG DAVNR
|
|---|
| |