| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0649 |
|---|
| Symbol | |
|---|
| ID | 6783482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 770449 |
|---|
| End bp | 772677 |
|---|
| Gene Length | 2229 bp |
|---|
| Protein Length | 742 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642766622 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_002137473 |
|---|
| Protein GI | 197117046 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGG AAAGCCAAAA CATCCGGCGC AGGACCACCT TCATTGCGCT GATCGTCTCC
ACGATGCTGA CGGTGGTTCC CCCCGCTATC TACTTCGTCA TGTCCTTTTC TCACATGAGG
GGCGTGGTCG AGGCCGAAGG GGAAATCAAC GCCCGCCTCG TAGGGACGCT CGTGGTGGCG
AACCCGCAGA TGTGGGAGTT CGAAGAACTG CGCCTGAAGG AGTTGCTGGG GCGCCGCTCC
AAAAGCGGCG TAAAGGAAAT AAGAAGGATC TACAACCTGA AGCGCGAAGT GATCGCGGAG
AGCGGGGAGC CGCTGCCGCG GCCGGTCTTC GCACTCTCCT TCCCCGTTCA CGATGCCGGG
CACGAGGTGG CCCTCCTCGA GGTTTCCCGC TCGTTGCAGC CGGTTCTGAT CAAGACGCTC
CTGGCCCTTA TCGGGGGCGC CCTGGTGGGG GCGTACGCCT TCTTCCGGCT GAGGACCGTG
CCGCTGCGCG CACTCGATGA GGCGTACCGG GTCCTGAAGC AGAGCGAGGA GAAGTACCGC
TCCGTGTACG AGTCGCTCAA CGAAGGGCTG GCGCTGTACC GGGCTTCCCG CCGTGAGGAC
GGCTCCGCCG ACCTGGTCCT GACCGACGTG AACCCTGCCG CCATCAACGT GTTCGGCTTC
AGCAGGGACG ACATCGGCGG CTGGATCACG GAGCTTCTGG ACGGGCTCTT CGCGGAATGC
GCCGAGCAGG TCTTCGGGGC GCTGCAGGCC CGGGGCGAGG TGAGCCTGGA TCTGGAGCAA
AACTCCACCG GCCGCATCTT CTCGCTCACC GCCTTCCCCA TGGGGTACGG CATGGTGGCG
ACGCTCCTTG AGGACGTGAC GGAGAAGAAG AGGACCGCGG AGCAGTTGGA GCGGCTCGCC
TACTACGACA GCCTCACCGG GCTTTTGAAC CGCCGCATGC TGCTGGACCG GATGGAGCAG
GCCATCGGGA CCGCGCAGCG GGAGGGGGTG AAAGTGGCCA CCCTGTTCAT GGACCTGAAC
GGCTTCAAGG TGATCAACGA CACGCTCGGG CACAAGGCGG GGGACCAGAT ACTTGTCGAG
GTGGCAAAGC GCCTGCAGAA GATGGTGCGC AAGAGGGATA CCCTGGCGAG GCTCGGGGGG
GACGAGTTCG TGGTGGCGGC GACCTTCGAG AAGGACGAAA ACGCGAGCGC CATCGCCAAG
AACCTGATCA ACGCCATCAC CCCGGTTTAC CAGGTCTGCG ACCGGGAGGT CTACGTGGGG
GTGAGCGTGG GGATCTCCAT TTTCCCCGAC GACGGGGATG TACCCGAGAC CCTCTTGAAG
AACGCGGACA TCGCCATGTA CAACGCCAAG AGCCAGGGGC AGGGCGGCTT CTGCTTCTAC
AGCGCGCAGT TGAACGAAAG GCTGCACGAA CGGATGCAGC TGGAGTTCAA GCTGAGGGGG
GCCGTGGAGC GCGAGGAATT CTTCCTTGAG TACCAGCCCA TCCTGGACAG CAAGACCGGG
CGCATCACCG CGGTGGAGGC GCTGTTGCGC TGGAACGACC CGGAAAAGGG GAGGGTGATG
CCCGACTCCT TCATCCCGCT CGCCGAGGAT ACCGGCGTCA TCCTCCCGCT TGGGGAATGG
GTGCTCCGCA CGGCCTGCGC CAAGCTCAGG CAGTGGCAGG ACGCAGGGGT CATGCCGGTG
CGGATGGCGG TGAACATCTC GGGGAGACAG TTCACCCAGG GGGACCTGTC GAAGACGGTG
GAGGATGCCC TGCTGCAAAG CGGCGTCCAC CCCTCCTGGC TGGAGCTGGA ATTGACCGAG
ACCTGCCTGA TCAAGAACGT CGAGGAGACG GTGAGAAAGC TCTGCCGCCT CAAGGGGTTG
TGCGTCTCCA TCTCCATCGA CGACTTCGGG ACCGGCTACT CCTCGCTGCA GTACCTGAAG
AACTTCCCCA TCGACCACCT GAAGATCGAC AGGGGGTTCA TCAACAACGT CTGCGAGCTC
CCGGACGACA GGGCCATTGT GGACGCCATC ATCGGCATAG CGAAGGCGAT GGATCTCCAC
GTCATCGCGG AAGGGGTCGA GACGAGGCAG CAGGCGGAGC ACCTGATGCG GCGCGGCTGC
GACGAGTTCC AGGGGTACTA CTTCTACCGG CCGCTCCCCG AGGAGAAGCT CCTGGAGGTG
CTGGCGAGCA AGGCCGCAGC GGGCCTTCCC CCCGGCGAAG ACGCCGACTG GCTGGAGCTT
CAGGCCTAG
|
|---|
| Protein sequence | MTQESQNIRR RTTFIALIVS TMLTVVPPAI YFVMSFSHMR GVVEAEGEIN ARLVGTLVVA
NPQMWEFEEL RLKELLGRRS KSGVKEIRRI YNLKREVIAE SGEPLPRPVF ALSFPVHDAG
HEVALLEVSR SLQPVLIKTL LALIGGALVG AYAFFRLRTV PLRALDEAYR VLKQSEEKYR
SVYESLNEGL ALYRASRRED GSADLVLTDV NPAAINVFGF SRDDIGGWIT ELLDGLFAEC
AEQVFGALQA RGEVSLDLEQ NSTGRIFSLT AFPMGYGMVA TLLEDVTEKK RTAEQLERLA
YYDSLTGLLN RRMLLDRMEQ AIGTAQREGV KVATLFMDLN GFKVINDTLG HKAGDQILVE
VAKRLQKMVR KRDTLARLGG DEFVVAATFE KDENASAIAK NLINAITPVY QVCDREVYVG
VSVGISIFPD DGDVPETLLK NADIAMYNAK SQGQGGFCFY SAQLNERLHE RMQLEFKLRG
AVEREEFFLE YQPILDSKTG RITAVEALLR WNDPEKGRVM PDSFIPLAED TGVILPLGEW
VLRTACAKLR QWQDAGVMPV RMAVNISGRQ FTQGDLSKTV EDALLQSGVH PSWLELELTE
TCLIKNVEET VRKLCRLKGL CVSISIDDFG TGYSSLQYLK NFPIDHLKID RGFINNVCEL
PDDRAIVDAI IGIAKAMDLH VIAEGVETRQ QAEHLMRRGC DEFQGYYFYR PLPEEKLLEV
LASKAAAGLP PGEDADWLEL QA
|
|---|
| |