| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0287 |
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| Symbol | |
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| ID | 6783113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 347111 |
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| End bp | 348904 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642766256 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_002137114 |
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| Protein GI | 197116687 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACGA CAACGAGCGA TTACCTGGTG CAGCGGCTTT ACGATTGGGG GGTGCGGCGG
GTGTACGGCT ATCCTGGCGA CGGGATCAAC GGCGTCATGG CCGCTCTGCG CAAGCAGGTG
GAGCGCGTCG AGTTCATCCA GGCGCGCCAC GAGGAGGAGG CGGCCTTCCT CGCCTGCGCC
CATGCCAAGT TCACCGGCGA GGTCGGGATC TGCATCGCGA CTTCCGGACC GGGCGCCATA
CATCTCTTAA ACGGCCTCTA TGACGCGAAA CTCGACCACC AGCCGGTGGT GGCAATCGTG
GGGCAGCAGG GGACCACGGC GCTGGGGTCC GATTACCAGC AGGAGGTTGA CCTCATCTCG
CTTTTCAAGG ACGTCGCGCA CCACTACGTG CACATGGCGA GCGATCCTTC CCAGATCCGC
CACCTGATCG ACCGGGCCAT CCGGATCGCC CTCGCGGAGC GGACCGTGAC CTGCGTCATC
CTCCCCGACA ACGTGCAGGA GATGGAGGCG GTGGAGTCGC CGGAGCGAAA ACACGGCACC
ACCTTCACCG GCCTTGGCTT CAGCCGGCCC GACGTGACGC CTGCGCGCGA CGACCTGGCA
CGGGCGGCGG AGGTCTTGAA CGCGGGCAAG AAAGTCGCGA TGCTGGTAGG CGCCGGGGCG
CTGGGCGCTT CGGACGAAGT TGCCATCGCC GCCGACATCC TCGGTGCCGG AGTCGCCAAG
GCGCTCCTAG GCAAAGCGGT CGTCCCGGAC GATCTCCCCT TCGTCACAGG CTCCATCGGG
CTTTTGGGTA CGAAGCCCAG CTGGGAGATG ATGATGGAGT GCGACACGCT CCTCATGGTC
GGCAGCGGCT TCCCGTACTC CGAGTTCCTC CCCAAGGAAG GGCAGGCGCG CGGCGTGCAA
ATCGACATCA GCCCGCGCAT GCTGGGGCTG CGCTACCCCA TGGAGGTGAA CCTGCAGGGG
GATAGTCTCC TTACCCTGAG GGCGCTGATT CCGCTATTGG AAAGAAAAAG CGACCGCGGC
TGGCGGCAGG GGATAGAGAA GAACGTCCGC GAGTGGTGGG AGATCATGCA GGCGCGCGCC
ATGCTCTCGG CCAACCCGAT CAACCCGCAG CGCCTTTTCT GGGAGCTCTC CTCGCGCCTC
CCCGACAACT GCATCCTCAC CTGCGACTCG GGCTCGGCGG CCAACTGGTA CGCCCGCGAC
GTTCGCATCC GCTCGGGAAT GATGGCGTCT CTGTCCGGCG GGCTCGCCAC CATGTGCCCC
GGCGTCCCCT ATGCGACGGC GGCGAAGATA AACCACCCGG ACCGCACGGT CGTCGCCATG
GTGGGAGACG GCGCCATGCA GATGCTCGGC ATCAACGGGC TCGTCACCAT CTCCAAGAAC
TGGAAGAGCT GGAGCAACCC GCGCCTGGCG ATCCTGGTTC TGGACAACAA GGACCTGAAC
CAGGTTACCT GGGAGCAGCG GGTCATGAGC GGCGACCGCA AGTTCAGCGG CTCCCAGGAC
ATCCCTCCCT TCCCGTACGC GCGCTACGCG GAGATGCTGG GGTTGCAGGG GATCGAGCTG
GACGACCCGC AACTGATCGG GGCCGCCTGG GATCACGCAC TGAACGCGGA CCGGCCGGTG
GTTATCGACG CGCATTGCGA CCCGGACGTG CCGCCCCTTC CTCCGCACAT CACCTTCGAG
CAGGCCAAGG GCTTCATGTT CTCCCTGGCC AAGGGGGACC CCAACCTAGG CGGCATCATC
AGCCAATCGG TGAAGCAGAT GATGTCGACC CTGCTGCCGC GAAGAGAAGA GTAG
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| Protein sequence | MATTTSDYLV QRLYDWGVRR VYGYPGDGIN GVMAALRKQV ERVEFIQARH EEEAAFLACA
HAKFTGEVGI CIATSGPGAI HLLNGLYDAK LDHQPVVAIV GQQGTTALGS DYQQEVDLIS
LFKDVAHHYV HMASDPSQIR HLIDRAIRIA LAERTVTCVI LPDNVQEMEA VESPERKHGT
TFTGLGFSRP DVTPARDDLA RAAEVLNAGK KVAMLVGAGA LGASDEVAIA ADILGAGVAK
ALLGKAVVPD DLPFVTGSIG LLGTKPSWEM MMECDTLLMV GSGFPYSEFL PKEGQARGVQ
IDISPRMLGL RYPMEVNLQG DSLLTLRALI PLLERKSDRG WRQGIEKNVR EWWEIMQARA
MLSANPINPQ RLFWELSSRL PDNCILTCDS GSAANWYARD VRIRSGMMAS LSGGLATMCP
GVPYATAAKI NHPDRTVVAM VGDGAMQMLG INGLVTISKN WKSWSNPRLA ILVLDNKDLN
QVTWEQRVMS GDRKFSGSQD IPPFPYARYA EMLGLQGIEL DDPQLIGAAW DHALNADRPV
VIDAHCDPDV PPLPPHITFE QAKGFMFSLA KGDPNLGGII SQSVKQMMST LLPRREE
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