Gene Gbem_0135 details

Gene Information

• Locus tag: Gbem_0135
• ID: 6782957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 163980
• End bp: 165962
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642766101
• Product: alpha amylase catalytic region
• Protein accession: YP_002136962
• Protein GI: 197116535
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGGCA GAGCGCGGAT AGCGATAGAG GGGGTCCACC CGCAGATCGA TTGTGGCCGG 
TTCGCCGTGC AGCGGGTAAC GGGCGACGAG ATGGCGGTGC AGGCGGACAT CTTCAGCGAC 
GGCCACGAAG AGGTGGTGGC CATGCTGCTC TACCGCCGCC AGGGGGATGA AGTGTGGCAG 
GAGACCCAGA TGCAGCGCCT GGAGAACGAC CGCTGGCAGG GGAGCTTCAA GCTCGGGGAA 
CCGGGGTTCT ACGAGTACAG CCTCCTCGGC TGGGTGGACC ATTTCCGCAC CTGGCAGCGC 
GACCTGCAGA AAAGGTTCGA GGCGGGGCAG GATGTCTCGG TCGACTTGAA GATCGGCAGC 
AGCATCCTGT CGCAGGCGGC CAAGGAGGCG AAGGAGCCGG ACGACGCGAA GCTGCGCCAG 
GCGGTGGAAG CGCTGAACCA GGAACCGGAG CTGGAAGGGG CGGTGGCGCT CGGACTCGAC 
AGCCGGCTTG CCGATCTGGT CAGCACCTGC TGCGCCCGCG GCCTCGCCAC CCGCTACCAC 
AAGGATCTTG TGGTCCGGGT GGACCGGAAA AAGGCGCTCT TCAGCAGCTG GTACGAACTC 
TTCCCGCGCT CCCTGGGGGG AGCGGAAGGG AGGCACGGCA CGCTGAAGGA CTGCATCGCG 
ATCCTCCCAG ACATCGCTGA GCTTGGCTTC GACGTGCTCT ATCTCCCCCC CATTCACCCC 
ATCGGCACCA GCAAGAGAAA GGGGAAGGCG AACCAGGTCG AGGCGGAGCC CGGGGACCCG 
GGGAGCCCCT GGGCCATCGG CTCGCCTGAG GGTGGGCACA AGTCTATACA TCCCGAACTG 
GGAACACTGG AGGATTTCCA GGCCCTGGTC CTCGAAGCGG ATCGGCACGG CATCGAGATC 
GCCCTCGACA TCGCCTTCCA GTGCTCGCCG GACCACCCCT ACCTGAAGGA GCATCCCGAA 
TGGTTTCTCT GGAGGCCGGA CGGCACGGTC CAGTACGCGG AGAACCCTCC CAAGAAATAC 
CAGGACATCG TCCCGTTCAA CTTCGAGACG CCGCAGTGGC AGGAGCTTTG GGAGGAGCTG 
AAGAGCATCT TCTTCTTCTG GATGGACCGG GGGGTGCGCA TCTTCCGGGT GGACAACCCG 
CACACGAAGC CCTTTCCCAT GTGGGAATGG ATCATCGCCA AGGCGAGGGA GAAGGATCCA 
AACGTCATCT TCCTCGCCGA GGCGTTCACC AGGCAAAAGA TCATGTACCG GCTGGCGAAG 
CTCGGCTTCT CGCAGTCCTA CAGCTATTTC GCCTGGCGCA ACAGCAAGCG GGAGCTGACC 
GAGTACCTGA CGGAGTTGAC CCGAAGCGAC GCGAAGGAGT TCATGCGCCC CAACTTCTGG 
CCCAACACCC CGGACATCCT GACCGAGTAC CTGCAGTACG GGGGCCGTGC CGCTTTCATG 
ATCCGGGTGA CGCTGGCGGC GACGCTTTCC TCCAACTTCG GCATATACGG CCCGGCGTTC 
GAGCTCTGCA TCCCGACGGC GGAGGCCGCC GGATCCGAGG AATACAAGGA CGCCGAGAAG 
TACGAGATCC GCCCATGGGA CCGCAAGGGG CCCGGGAACA TCAGGGAGCT GATCTCCAAG 
CTGAACCGGA TCCGGCGCGA GTATTCGGCG CTGCAGGAGA CCTGCAACGT GCAGTTCCTG 
GAGTCCGACA GCGACAGCGT GCTCTTTTTC GTGAAGACCT CCGGTAAGCC GGGCGCCTCG 
CTCCTGGTCG CCGTGAACCT CGACCCTTTC CGGGTCCGCA GCGCGAAACT GCGCCTGCCG 
CTGGGGCTTC TCGGTGTCCT GTCCGGACAG TCGTACCTGT TGCACGACCT CTTGAACGGC 
GAGCGCTCCA TCTGGCAGGG GGAGTGGGCC AGCGTAACCC TCGACCCGCA GCTGGCGCCG 
GCAGGGATCT TCCGCCTCAG CACCTGGCTC CGCAAGGAAT CCGACTTCGA TTACTACTTA 
TAG 

 

Protein sequence

MEGRARIAIE GVHPQIDCGR FAVQRVTGDE MAVQADIFSD GHEEVVAMLL YRRQGDEVWQ 
ETQMQRLEND RWQGSFKLGE PGFYEYSLLG WVDHFRTWQR DLQKRFEAGQ DVSVDLKIGS 
SILSQAAKEA KEPDDAKLRQ AVEALNQEPE LEGAVALGLD SRLADLVSTC CARGLATRYH 
KDLVVRVDRK KALFSSWYEL FPRSLGGAEG RHGTLKDCIA ILPDIAELGF DVLYLPPIHP 
IGTSKRKGKA NQVEAEPGDP GSPWAIGSPE GGHKSIHPEL GTLEDFQALV LEADRHGIEI 
ALDIAFQCSP DHPYLKEHPE WFLWRPDGTV QYAENPPKKY QDIVPFNFET PQWQELWEEL 
KSIFFFWMDR GVRIFRVDNP HTKPFPMWEW IIAKAREKDP NVIFLAEAFT RQKIMYRLAK 
LGFSQSYSYF AWRNSKRELT EYLTELTRSD AKEFMRPNFW PNTPDILTEY LQYGGRAAFM 
IRVTLAATLS SNFGIYGPAF ELCIPTAEAA GSEEYKDAEK YEIRPWDRKG PGNIRELISK 
LNRIRREYSA LQETCNVQFL ESDSDSVLFF VKTSGKPGAS LLVAVNLDPF RVRSAKLRLP 
LGLLGVLSGQ SYLLHDLLNG ERSIWQGEWA SVTLDPQLAP AGIFRLSTWL RKESDFDYYL