| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU3089 |
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| Symbol | rpoD |
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| ID | 2686774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | - |
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| Start bp | 3394412 |
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| End bp | 3396145 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637127782 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | NP_954130 |
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| Protein GI | 39998179 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGA AAAGCACGGA CGAAGTCAAG CAACTCATCG ACCTGGGAAA GGAAAAGGGA
TTCCTCACCT ATGATGAGGT AAACGACCTT CTTCCTCCCG ATATTTCATC CGAGCAGATC
GACGACGTAA TGAGCATGTT CGGTGAGATG GATATTGACA TCGTCGATTC GGCCCAGAAG
GTAAAAATCC CCAAGATGAA ACTCGACCTG GAGGAAGAGG AAGAGATTGA AGGGGAACAG
GAAGACTTCG AGTACGAGCC GGGCGCTCTG GGAAGGACAA GCGATCCGGT ACGGATGTAT
CTGCGCGAGA TGGGATCGGT GTCGCTACTC ACCCGCGAGG GTGAGGTGGA AATTGCCAAG
CGTATTGAGG AGGGCGAGCG GGATATCGCC GGCGTCATCC TCAATACCCC CATCACGGTG
AAGGAGATCA TCGCACTTGG CGAGAAGCTC CTGAGGGGGC AGGTCAGCGC CGCCGAGATC
AGCAAGGAGG TGGAGGAAGA GGAGCTGGAG GAGGATGAAG AGGATGTGCA GAAGACCCGT
CTTCTTGCCC AGGTGGAGGA AATTGCCGCC GTCGATGTCC GCCTTGCTGC CCTGAATGCC
GAGCTGGAGG AGGAATCCCT TTCCGCCTCC CGTCGGCAGG AGTTGCTCGC TGAACGGCAG
GAGTTGAAGG AAAAGCTTGC CGAGATGGTT ACCTCCCTGC GTCTCAAGGA TCGGCACATA
GCCAAGATCG CCCAGCGGCT CAAGGAGTTG TCGGCCAAGG TTGATACCAT TATGGCGGAG
ATTGCCGCCA TTGAGAAGGA GGCGGGAGTC TCCGCCGACA CCCTCAAGGA GATTGCCGCC
AGCGAAGCTG TGGGAAAGGG GATCAAGCTT TCTCTGGAAG ATGCTCAGAA GCACGAGAAG
AAGGTGCGCT CAGCTGAGAA GAAACTGAAG AAGGTTGAGG AAGAGTCCGG GTTCAAGGCC
CGTGAGCTTT CCGACGCCCT CAGGGCCATC GATCGGGGTG AAGCCAAGTC GAAGCTGGCC
AAGTCGGAAC TGGTGGAGGC GAACCTGCGG CTCGTGGTAT CCATTGCCAA GAAGTACACC
AACCGGGGGC TCCAGTTTCT CGACCTCATT CAGGAGGGGA ACATCGGTCT CATGAAGGCG
GTGGACAAGT TTGAGTACCA GCGCGGGTAC AAGTTCTCGA CGTACGCCAC TTGGTGGATT
CGACAGGCCA TTACCCGAGC TATCGCCGAC CAGGCCCGCA CCATCCGGAT TCCGGTCCAT
ATGATCGAGA CCATCAACAA GCTGATCCGG ACCAGTCGCC AACTGGTGCA GGAAATCGGT
CGTGAGCCGT CGCCGGAGGA AATCGCCGAA CGGATGAATC TCCCCCTCGA CAAGGTACGC
AAGGTCCTCA AGATCGCCAA GGAGCCCATC TCACTCGAAA CTCCCATCGG GGAAGAGGAA
GATTCACACC TGGGGGATTT CATCGAAGAC AAGGGTGTGG TTTCGCCTCT GGAGGCGGTC
ATCAAGGCCA ACCTTTCGGA GCAGACCGCC CGCGTGCTTG CCACCCTCAC CCCCCGGGAG
GAAAAAGTTC TGCGGATGCG TTTCGGCATC GGCGAGAAGA GCGATCATAC CCTTGAGGAG
GTGGGGCAGG ACTTCGAGGT GACCCGGGAG CGGATTCGTC AGATCGAGGC CAAGGCCCTG
CGCAAGCTCC GCCATCCGAG CCGGGCCAAG AAACTCCGCA GCTTCGTGGA ATAG
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| Protein sequence | MAKKSTDEVK QLIDLGKEKG FLTYDEVNDL LPPDISSEQI DDVMSMFGEM DIDIVDSAQK
VKIPKMKLDL EEEEEIEGEQ EDFEYEPGAL GRTSDPVRMY LREMGSVSLL TREGEVEIAK
RIEEGERDIA GVILNTPITV KEIIALGEKL LRGQVSAAEI SKEVEEEELE EDEEDVQKTR
LLAQVEEIAA VDVRLAALNA ELEEESLSAS RRQELLAERQ ELKEKLAEMV TSLRLKDRHI
AKIAQRLKEL SAKVDTIMAE IAAIEKEAGV SADTLKEIAA SEAVGKGIKL SLEDAQKHEK
KVRSAEKKLK KVEEESGFKA RELSDALRAI DRGEAKSKLA KSELVEANLR LVVSIAKKYT
NRGLQFLDLI QEGNIGLMKA VDKFEYQRGY KFSTYATWWI RQAITRAIAD QARTIRIPVH
MIETINKLIR TSRQLVQEIG REPSPEEIAE RMNLPLDKVR KVLKIAKEPI SLETPIGEEE
DSHLGDFIED KGVVSPLEAV IKANLSEQTA RVLATLTPRE EKVLRMRFGI GEKSDHTLEE
VGQDFEVTRE RIRQIEAKAL RKLRHPSRAK KLRSFVE
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