| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1804 |
|---|
| Symbol | pdxJ |
|---|
| ID | 2688716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 1969534 |
|---|
| End bp | 1970253 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637126491 |
|---|
| Product | pyridoxine 5'-phosphate synthase |
|---|
| Protein accession | NP_952854 |
|---|
| Protein GI | 39996903 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0854] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00559] pyridoxine 5'-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.207619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAAGC TCGGAGTCAA CATTGATCAT GTAGCAACAA TCCGCCAAGC CCGGGGCGGC
GTTGAGCCCG ACCCGGTGGC GGCCGCCGCC ATTGCCGAGT TCGCCGGTGC CGACGGGATA
ACGGTGCACC TGCGCGAGGA CCGGCGGCAT ATTCAGGACC GGGACCTGCG TCTGCTCCGT
CAGACCGTTA AGACGAAGCT CAATCTGGAA ATGGCCGCCA CCGACGAGAT GGTGGGTATA
GCTTTGTCGG TCAAACCCGA CATGTGCACC CTGGTACCGG AGCGACGCCA GGAGCTTACC
ACTGAGGGGG GGCTTGATGT GAGAGTCGGC ATGCAGGCGC TTGCCGATGC CATTGGACGC
CTTCAGGACG GCGGCATTGT AGTGAGTTTG TTCATTGATC CCGATGCGGA TCAGGTCAAG
GCATCCAGCA AGGTGGGGGC CGACTACATC GAAATCCACA CCGGAACCTT TGCCGAGGCA
CGGGAGTGGA AAAAGGAGCA GGCCGAACTT GAGCGCATCG AAAACGCCAT CAAGCTCGGC
ACAAAGCTCG GGCTCGGCAT CAATGCCGGG CATGGCCTCA ATTATACCAA TGTTCGCAAA
GTCGCGGCCC TCGGAGGTAT CGAGGAATTC AACATCGGAC ATTCCATAAT CTCACGCGCA
GTGTTTACCG GGCTCGACCG TGCCGTGCGG GACATGGTAG ACCTCGTCAA GTACGCATGA
|
|---|
| Protein sequence | MAKLGVNIDH VATIRQARGG VEPDPVAAAA IAEFAGADGI TVHLREDRRH IQDRDLRLLR
QTVKTKLNLE MAATDEMVGI ALSVKPDMCT LVPERRQELT TEGGLDVRVG MQALADAIGR
LQDGGIVVSL FIDPDADQVK ASSKVGADYI EIHTGTFAEA REWKKEQAEL ERIENAIKLG
TKLGLGINAG HGLNYTNVRK VAALGGIEEF NIGHSIISRA VFTGLDRAVR DMVDLVKYA
|
|---|
| |