| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1745 |
|---|
| Symbol | |
|---|
| ID | 2685347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 1909766 |
|---|
| End bp | 1911340 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637126425 |
|---|
| Product | OmpA domain-containing protein |
|---|
| Protein accession | NP_952795 |
|---|
| Protein GI | 39996844 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.155252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGAC TTCGGGTAAT TCTTACAATC TTCCTCTCGC TGCTCGCCTC GGAGGTTTTT
GCTAATCCGT CCACCAGCGG CGAGACGGGA CTCATCACGG TCCCGTCGGC CGAAACCCTC
GACGCGGGCA ACATCTGCGT CGGTCTGTGG GGGATAGGCA CCGGTACGCA GGCGGATAAC
GCCCTGACCC TCCCCGCGTC GCTCACGCTC GGCATAGGCT CGTTCTGGGA AATATACGGC
AACTATCCGA ACCTGCTGTT CAACGGCGAT GAGGACAAGA CCGATCGGGG CTACGCCGAA
ATAGGAACCA AACTTCGCTT TCTCGGCAAG AGAAGCTCCC CCCTGAAGGC TGCAGTCGAT
CTCTTCGTAC AGCGGCAGAT CTCCGAAGAC CCCGACGTGG ATGGAACAAC CCACGGCGGC
GGCCGACTCA TCACCTCCTA TTCCTCCGAA CAACTCGGCG TGCACGGCAA TCTGGGCTAC
CTCTTCGCTG GCTCTTATGC CAACAGGTCG GTTGATGATG AAATCCTCTA CGGTTTCGGC
ATCGACTATA CGCCCGCAAC CCGCCTGAGG CTTACGGCAG AGTTGACGGG AAGCACCGGA
CGCTTCGCAG ATCAAGACGC TCCCCTGGAG GGGCTCCTCG GATTCCAGTA CTACATCTCG
CCGCATCTCA CCCTCAATCT TGCCGGCGGG CTCGGTCTTT CCGATGCCAG CCCCGACTGG
CGCGCCGTGG CCGGGCTCAC GGCATGTCAA GGCGTCGGTA CCTACATCAA GCCGGTCCCT
CGACTGGGAG GCGGTGATTT CGAGGAAGAA AAGCAAAAGA AGCAAGAACC AGTGAAGATC
AGAAAGATCA TTCCGATTTC CCCCCTCCTG ATCAGCTCCC TTTCCCAGCC TGCTCCGGTC
AGCAAGCTTG AGGTCCCCCT TGGTCAGGAC AAGGAAGATG TTGTTATCAA GCCGTACGGG
AAGGTGACTC TTGCCGCCCA GGCCGCCAAT GCGCCCGTTG CGGTGGCTGC CGCATCCGAA
GAGGTTGCAC TGGGGCAGGG GGGAGAAGAG GTGCGCCTGG CCACCCGGTC CGTGGACGGG
TACGAGAATG TGGCCCTTGA ATACACGCTG AGCAGACTGG AAGGCGTTAC CCCGCTGTAC
AGTGTCGACG TCAAGGGACA GAATTTCCAG GTGGCATCAG CCGTGCACGA GAATATTCCG
GAAGCAATGA CCGTCTACCG CAAGTTCCGC TTTCCGGACG TATCCTTCGA TTTCGATCAG
TGGAGCCTTT CCGCCGAAGG GAAAAAGGCC CTTTCCGAGG TTGCCGAGCA GATTCGCAGG
GACAAACGGT GGGTTTATCT CCGAATCGAC GGGCATGCGG ACAACATCGG CTCGGTCGGC
TACAACATGG ATTTATCGCT CAAACGTGCC ATTTCAGTGG CCAGCTATCT CATTGCCCGC
GAAGGGATCG ACCCGTCCCG CCTCTTTGTC AAGGGGCTCG GCAAGTCAAA GCCCATTGGC
GACAACAAGA CTGCCGAAGG GAGAAAACTC AATCGCCGGG GCGAGATACT GTTTCTGATC
CCCAAGGACG AGTAA
|
|---|
| Protein sequence | MQRLRVILTI FLSLLASEVF ANPSTSGETG LITVPSAETL DAGNICVGLW GIGTGTQADN
ALTLPASLTL GIGSFWEIYG NYPNLLFNGD EDKTDRGYAE IGTKLRFLGK RSSPLKAAVD
LFVQRQISED PDVDGTTHGG GRLITSYSSE QLGVHGNLGY LFAGSYANRS VDDEILYGFG
IDYTPATRLR LTAELTGSTG RFADQDAPLE GLLGFQYYIS PHLTLNLAGG LGLSDASPDW
RAVAGLTACQ GVGTYIKPVP RLGGGDFEEE KQKKQEPVKI RKIIPISPLL ISSLSQPAPV
SKLEVPLGQD KEDVVIKPYG KVTLAAQAAN APVAVAAASE EVALGQGGEE VRLATRSVDG
YENVALEYTL SRLEGVTPLY SVDVKGQNFQ VASAVHENIP EAMTVYRKFR FPDVSFDFDQ
WSLSAEGKKA LSEVAEQIRR DKRWVYLRID GHADNIGSVG YNMDLSLKRA ISVASYLIAR
EGIDPSRLFV KGLGKSKPIG DNKTAEGRKL NRRGEILFLI PKDE
|
|---|
| |