Gene GSU1222 details

Gene Information

• Locus tag: GSU1222
• ID: 2685273
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 1326135
• End bp: 1327292
• Gene Length: 1158 bp
• Protein Length: 385 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637125896
• Product: histone deacetylase/AcuC/AphA family protein
• Protein accession: NP_952275
• Protein GI: 39996324
• COG category: [B] Chromatin structure and dynamics; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0627011
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCCAGCCA GAACAGCCCT CATATACTCG AACGATTTCG CCCGGTTCAG CTACGGCGAC 
GATCACCCGT TCAAGATCCA GCGTTTCATT CTCGCCTTTG AGCTCATGCG CGCCTATGGC 
CTCATGGAGC TTCCGAACGT CAAAATCCTC GACTGCCCCC GAGCTGCGGA AGAGGCACTG 
CTTACCTTTC ACGCGCCCGA CTATCTCGAT CGTCTCAGGG AATTCAGCGA GTCGGACGAT 
GCCCGCGCCG ATTTCCGGTA CGGTCTCGGC GATCTGGACA ACCCGGTTTT CCGGGGGCTC 
TACGACTGGG CACGGCTGGG TGCCGGAGGG ACCATCGAGG CGGCCCGGCT GGTTGCCGAG 
GAGGGCTATG ACATCGCCTT CAATCTTGCG GGGGGGTGGC ATCACGCCCA TCGGGCCAAG 
GCATCGGGAT TCTCCTATCT GAACGACGCG GTCGTGGCCA TCAACCTGCT CCTGGAAAAG 
GGCCTGCGGG TGGCGTACCT CGATATCGAT GCCCACCACG GCGACGGAGT GCAGGAAGCG 
TTTTACGATA CGGACCGGGT CCTGACCATT TCGATTCACG AGAGCGGCAT GTACTTCTTT 
CCCGGCACCG GTTTCGAGGG GGAAACCGGC ACCGGCGCGG GCACGGGGTA TTCGGTCAAT 
ATCCCGCTGG TGGCCCACGC CGACGATGCG CTTTTCATGA AGGCCTTCGA CGAAGTGGCG 
TTTCCGCTTC TCGCCGCCTA TAATCCCGAC GTCCTCGTGA CTCAACTGGG CGCCGACACC 
TTCCGTACCG ATCCTCTCAC GCGGCTTGAG GTGACGACTC ATAGCTACAC CTATATCCTG 
CGCAAGCTCA AGGCGCTCGG CATCCCCTGG GTTGCCGTGG GAGGGGGCGG ATACAACCTG 
GTCAATGTGG CCAGGGCCTG GACCCTTGCC TGGGGGGTGA TGAACGGGGT CGAACTGCCG 
CCCCGACTGC CGGATTCGTT TGTGTCGATC ATCGGCCGGC TCGGCTATCC CAACAGGATG 
CTCCTCGATG CCATGCACTG GGCCCAGGAG GACGACCGCA ACCAGGCACT GGACGCGGTG 
GAGCGAAGCA TAGCTGTCAT CCGGAAGACG ATTTTTCCGG TGATCATCGG TTCCTATGGC 
GAGACTTCCG GGGAATGA 

 

Protein sequence

MPARTALIYS NDFARFSYGD DHPFKIQRFI LAFELMRAYG LMELPNVKIL DCPRAAEEAL 
LTFHAPDYLD RLREFSESDD ARADFRYGLG DLDNPVFRGL YDWARLGAGG TIEAARLVAE 
EGYDIAFNLA GGWHHAHRAK ASGFSYLNDA VVAINLLLEK GLRVAYLDID AHHGDGVQEA 
FYDTDRVLTI SIHESGMYFF PGTGFEGETG TGAGTGYSVN IPLVAHADDA LFMKAFDEVA 
FPLLAAYNPD VLVTQLGADT FRTDPLTRLE VTTHSYTYIL RKLKALGIPW VAVGGGGYNL 
VNVARAWTLA WGVMNGVELP PRLPDSFVSI IGRLGYPNRM LLDAMHWAQE DDRNQALDAV 
ERSIAVIRKT IFPVIIGSYG ETSGE