| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0646 |
|---|
| Symbol | trmD |
|---|
| ID | 2687328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 678959 |
|---|
| End bp | 679696 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637125312 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | NP_951703 |
|---|
| Protein GI | 39995752 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.470327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTG ACATATTGAC GCTGTTTCCA GCCATGTTCG ACGGGCCTCT TACCGAAAGC
ATCATCCGGC GGGCCGTGGA ACGGGGGTTC GTGGATATCA GTCTGCACAA TATTCGCGAC
TACGCAACCG ATCGGCACCG GGTCGTTGAT GATGCCCCGT ACGGCGGCGG TGATGGCATG
GTCATGAAAG TCGAGCCTCT TGCCGCCTGC ATTGAGGCGG TGAAGGCAGA GCGGCCGGCA
GCGCGGGTCA TCCTGACCAC CCCCCGGGGG CGGCGATTCG ACCATGACGC CGCCCGCGAG
CTGGCCGGCT ACGAAGAGCT CATCATCGTT TGCGGCCGTT ATGAAGGAAT AGACGAACGG
GTGCGCGATC TCTTTGTGGA TGACGAATTT TCCATCGGCG ATTTCGTCCT CACGGGAGGC
GAACTTGCCG CAATGGTCAT GATCGACGCG GTGATCCGTT TTATCCCCGG CGTCCTCGGT
TCTCCCGGCT CGGCGGAATA TGATTCATTC GCTGACGGCC TGCTCGAATA TCCTCAGTAC
ACCCGTCCGG TGGAGTTCCG GGGGGTTCAA GTGCCAGGGG TCCTCCTGTC GGGAAACCAC
GCCGAGATCA GCCGATGGCG GCGCCAGAAA GCTCTTGAGT TGACGAGGCG GGTGCGTCCC
GATCTGCTCC ACAAAGCGGA ACTAAGCAGC AGTGACCGGG ACTGTCTGGC GATGCTCGAA
AGGGAAGGCG AGCCATGA
|
|---|
| Protein sequence | MKFDILTLFP AMFDGPLTES IIRRAVERGF VDISLHNIRD YATDRHRVVD DAPYGGGDGM
VMKVEPLAAC IEAVKAERPA ARVILTTPRG RRFDHDAARE LAGYEELIIV CGRYEGIDER
VRDLFVDDEF SIGDFVLTGG ELAAMVMIDA VIRFIPGVLG SPGSAEYDSF ADGLLEYPQY
TRPVEFRGVQ VPGVLLSGNH AEISRWRRQK ALELTRRVRP DLLHKAELSS SDRDCLAMLE
REGEP
|
|---|
| |