Gene GSU0230 details

Gene Information

• Locus tag: GSU0230
• Symbol: pilT-2
• ID: 2687491
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: -
• Start bp: 237886
• End bp: 238956
• Gene Length: 1071 bp
• Protein Length: 356 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637124896
• Product: twitching motility protein PilT
• Protein accession: NP_951291
• Protein GI: 39995340
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.571301
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATATGA ACCTTCTGTC CCAGATTCTG GGCATTGCCT TTGAAAAGCG GGTTTCCGAC 
CTCCACTTCG AGGTGGACAA TCCCCCCTTC TTCCGTGCCA AGGGGCAGTT GCTCCGCTCA 
AAGTTGCCGA AGCTCTCCCC CCAGGACACC GAATTCATCG CCCGGGCCGT TATGGAGCAG 
AACCACCGGA CCCTCCCCGA CGAGCTGCGG GAGCTGGACG CCTCCTACTC GCTCCCCAAT 
GGCGGGCGCT TCCGGGTGAG CATCTTCCGT CAGCGCGGGA GCATCGGCAT CGTCATGAGG 
GTGATTCCTC CCCACGTGGG GACCTTCGAG GAACTCAACC TGCCGCCGGT CCTGGGAGAG 
ATCGCCAAAG CCCCCAACGG CCTCGTGCTG GTCACCGGCC CCACGGGCAA CGGTAAGTCG 
ACCACCCTTG CCTCCATGAT TCGCCACCTG AACGAGACCT GCACCTTCAA CATCATCACC 
ATCGAGGACC CCATCGAGTT CCTCTTCACC TCGGACAAGA GCTGCATCAT CCAGCGGGAG 
GTGGGAATCG ACACGGTCGA CTTCAGCGCG GCGCTCCGCT CGTCCCTGCG GATGGACCCC 
GACGTGATCA TGGTGGGCGA GATGCGCGAC CTGGAAACCA TCGACGCCTG CATCAAGGCG 
GCGGAGACGG GCCACCTGGT CTTTTCCACC CTCCACACCC AGAGCGCCGT ATCCACTATC 
AACCGGCTCA TCGGCCACTT CCCCCCCGAT GCCCAGGAGG TCCTGCGCCA GCGCCTGGCC 
GACATCCTGG TGGCCACCGT GTCGTTACGG CTCATCAAGG ACAAATCCGG GGAGAACATC 
CTGCCGGTGG TGGAGGTGAT GCGAGCCACA ACCACCATCC AGGCCTGCAT TCGCGAGGGA 
CGCCTGGACG AGATCGAGAA GCACATCGAA AACGGCCGCT CCCTCTACCA GATGCAGACC 
CTTGACCAGC ACCTGCTGGA ACTGTGCGAG AAGGACGTCA TTACCTTCGA CCAGGCCAAG 
CAGATCACCC GCTCCATGGA CCTTGAGCGG AAGCTGGCCT TCACCGAGTA G 

 

Protein sequence

MDMNLLSQIL GIAFEKRVSD LHFEVDNPPF FRAKGQLLRS KLPKLSPQDT EFIARAVMEQ 
NHRTLPDELR ELDASYSLPN GGRFRVSIFR QRGSIGIVMR VIPPHVGTFE ELNLPPVLGE 
IAKAPNGLVL VTGPTGNGKS TTLASMIRHL NETCTFNIIT IEDPIEFLFT SDKSCIIQRE 
VGIDTVDFSA ALRSSLRMDP DVIMVGEMRD LETIDACIKA AETGHLVFST LHTQSAVSTI 
NRLIGHFPPD AQEVLRQRLA DILVATVSLR LIKDKSGENI LPVVEVMRAT TTIQACIREG 
RLDEIEKHIE NGRSLYQMQT LDQHLLELCE KDVITFDQAK QITRSMDLER KLAFTE