Gene GSU0158 details

Gene Information

• Locus tag: GSU0158
• Symbol: lysA
• ID: 2687944
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 176159
• End bp: 177412
• Gene Length: 1254 bp
• Protein Length: 417 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637124825
• Product: diaminopimelate decarboxylase
• Protein accession: NP_951220
• Protein GI: 39995269
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0019] Diaminopimelate decarboxylase
• TIGRFAM ID: [TIGR01048] diaminopimelate decarboxylase

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.193099
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCACT TCCAGTACAA GGGGAACGAG CTCCACGCCG AGGAGGTTTC GCTCAAGGAG 
ATCGTGGCCC GGGTTGGTAG CCCGGTCTAT GTTTATTCCC ACGCCACCCT GACCCGGCAC 
TTCACTGCCT TTGACGAGGC CTTCGCCGGC GTGCCCCACA CCATCTGCTA CTCGGTCAAG 
GCCAACTCCA CCCAGGCAGT GCTCAGGACG TTCATCACCC TGGGCGGTGG CGCCGACATC 
GTTTCCGGCG GCGAGCTCTA CCGCGCCCTC CAGGCCGGCG TCGATCCGAA AAAAGTGGTC 
TATTCCGGGG TGGGTAAGAA GGACGACGAG ATCGAGTACG CCCTGAACAC CGGCATCCTC 
ATGTTCAACG TGGAGTCGGA GCAGGAGCTG ACCCGCATCT CCGAGATCGC CTCCCGCATG 
GGCAAGAAGG CGGGCATCGC CATCCGGGTC AACCCCGACG TGGACCCCCA GACCCATCCC 
TACATCACCA CGGGCCTCAA GAACGCCAAG TTCGGCATCA CCATCGACCG GGCCATGGCC 
GAATACGCCC GCGCCAAGAC GCTCCCCGGC ATCGATGTGA TCGGCATCGA CATGCACATC 
GGCTCCCAGC TGACCAAGGT CACTCCCTTC GTGGACTCCA TCGAGAAGCT GAAGACGATG 
ATCGCCAACC TGCGCGGCCA GGGGATCGAC CTGCAGTACT TCGACTGCGG CGGCGGCCTG 
GGGATCCAGT ACAGCACCGA AGAGCCGCCG CTCCCCGCCG ACTACGGCAA GGAGATCGTC 
GCGGCCACCA AAGAGCTGGG CATGCACCTG CTCTTCGAGC CGGGCCGCAA CATCGTGGGC 
AACGCTGGCA TCCTGGTGGC CACGTGCCTC TTCACCAAGG AGCGGGACGA GAAGAACTTC 
ATCATGATCG ACGCCGGCAT GAACGACCTG GCCCGTCCGG CCCTCTACGG CTCTTTCCAC 
GGCGTACAGC CGGTGGTCAA GGACCAGGAC GGCATGATCG TGGCCGATAT CGTGGGTCCC 
ATCTGCGAGT CGGGCGACTT CCTGGTGAAG GACCGGGAGG TACCCATGTT CCGCCAGGGC 
GATCTGATGG CCTTCATGTC GGCCGGCGCC TACGGCTTCG CCATGAGCAG CACCTACAAC 
AGCCGCCCCC GGGTGGCCGA GGTGATGGTC AAGGGTAACC AGTTCGAAGT GGTCCGCGAG 
CGGGAGACGG TGGAAGACCT GATCCGGGGC GAGCGGGTGC CGTCGTTCCT GTAA 

 

Protein sequence

MNHFQYKGNE LHAEEVSLKE IVARVGSPVY VYSHATLTRH FTAFDEAFAG VPHTICYSVK 
ANSTQAVLRT FITLGGGADI VSGGELYRAL QAGVDPKKVV YSGVGKKDDE IEYALNTGIL 
MFNVESEQEL TRISEIASRM GKKAGIAIRV NPDVDPQTHP YITTGLKNAK FGITIDRAMA 
EYARAKTLPG IDVIGIDMHI GSQLTKVTPF VDSIEKLKTM IANLRGQGID LQYFDCGGGL 
GIQYSTEEPP LPADYGKEIV AATKELGMHL LFEPGRNIVG NAGILVATCL FTKERDEKNF 
IMIDAGMNDL ARPALYGSFH GVQPVVKDQD GMIVADIVGP ICESGDFLVK DREVPMFRQG 
DLMAFMSAGA YGFAMSSTYN SRPRVAEVMV KGNQFEVVRE RETVEDLIRG ERVPSFL