| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0324 |
|---|
| Symbol | |
|---|
| ID | 8135631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 399511 |
|---|
| End bp | 402900 |
|---|
| Gene Length | 3390 bp |
|---|
| Protein Length | 1129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644867941 |
|---|
| Product | exodeoxyribonuclease V, beta subunit |
|---|
| Protein accession | YP_003020163 |
|---|
| Protein GI | 253698974 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 0.904758 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAT TCGACCTGCT CCATACCCCG CTTGCCGGGC GCAACCTGAT CGAGGCGAGC
GCCGGCACCG GCAAGACCTT CACCATCGCC GGGGTCTACC TGCGCCTGGT GCTCGAAGAG
AAATTCGACG TCTCGCGCAT CCTGGTGGTC ACCTTCACCG AGGCCGCCAC CAAGGAGCTC
AAGGAGCGGA TCAGGAACAA ATTGAAGGAA GCGGAAAACG GCTTCCTGAC CGGCGCCGCC
GAGGATTTCC TCATCGATGG GCTGCTCAAG TCGACGCCGG ACCACTCCGA GGCGCGGCGG
CTTCTCGGGA GCGCCGTACG GAGCTTCGAC GAGGCCGCCA TCTTCACCAT CCACGGTTTC
TGCCAGAGGA TGCTGCAGGA CAACCCCTTC GAGAGCGGCT CCCTGTGCGA CACCGAGCTT
GTCACCGACC AGGGGAAGAT CCTCATGGAG ATCGCCCAGG ACTACTGGCG CATCAACTGC
TACGGCCAGC CTGAGGATAG GATCGCCGCG GCCGGCGCCG CCAAAGTATC CCCGGAGTCC
CTGCTGAAGC TGGCGCAAAG GGTCTGCGGC GACCCGAACG CCGCGGTGAT CCCGGACCCG
CCCGACGACG CCACCGAGCT GGATGATTGG CTCCAGGGGC TCAAGCGCGG CTTCTTCGAC
TACCTGCGCG CCGAGCTCCC GAAACGAAAG CGGCTGAAGA ACCTGCGTTC CTTCGACGAC
CTCCTCCTCG ACCTGCACGC GGCGCTGCTG CGCCCCGCTT CGCCCCTGCC GCGGCTGATC
CGCGAGCGGT ACCAGGCGGC CCTCATCGAC GAATTCCAGG ACACGGATCC CCTCCAGTTC
GCCATATTCG ACGCCATCTA CCCGGTGGGA CACGAGGCCC CATTTTTCCT GATTGGCGAT
CCCAAGCAGG CCATCTACAG CTTCCGCGGC GCCGACATCT TCGCCTACAT GGGGGCGGCC
CAGGCGACCA AAGAGCGCCA CACCCTGCTG CAGAACTTCC GCTCCGAAGC GGGACTGATC
GACGCCGTCA ACACCCTCTT CGCGTCGCGC GAGCTCCCCT TTCTCTACCC GCAGATAGGC
TTCAACAGGG TGGAGGCGGC CCCGAAGGAG AAGAGCAGGC TCGTCGAGGC GGGACAGAGG
AAGGCGCCGC TGAAGCTCTG GCTCGCCCCG CGCAAGGACG CCGGGAAGCC GATCAACAAA
GGGGATGCCT GGGAGCAGCT CCCGGAAACG GTGGCGGCGG AAATCTCGCG GCTTTTGCGC
GACGGCGCGG CCGGAAAGCT GACCGTCGAG GAACTCCAAA AGGACGCGGA GGAGAGCGAG
AAGTGGGTGC GGCGCGCGGT CGAGCCGAAG GATATCGCGG TCCTGGTGCG GGCGAACCGG
CAGGCGAAGC TGATGCAGCG CGCACTCACC CGCAGGGGGA TCCCGAGCGT CCTCTGCAGC
GCGGGGAACC TCTTCGAGTC CGACGAGGCG GCGGAACTGC TCCGGCTCCT CTCGGCGGTG
GCGCAGCCGG GGCACGAGTC GCTCTTGCGC GGGGCGCTCG CCACCGAGCT GGTCGGGGTG
AGCGGGACGG AACTAGCGAG GCTCATGAAC GACGAGAAGG GGTGGGAGGA GATCCTGGAG
GAATTTCGGG GCTACCACGA CACCTGGAAC AGCGGCAGTT GCATGTCCAT GGCGCTGCAG
TTCATGGAAA AGCGAGAGGT CAGGAAGCGG CTGCTCGCTG AACCGATGGG GGAGCGGCGC
CTAACGAACC TCCTGCACGC CATCGAGACC ATGCACCAGG CGCAGGTCAA CGAACGCCTG
GGGATGGAAG CGGTCATCGC CTGGCTCGCC TGCCGCATCA CCGAGGAGCC CAAGAAGGAA
GAGTACGAGA TTCGGCTGGA GACCGACGAG GCCGCGGTGC AACTGGTCAC CATCCACAAG
AGCAAGGGGC TCGAGTACCC CATCGTCTTC CTCCCTTTCT GCTGGGCCGA GTACGCCGGC
AAGGACGAGG GGGCGCTCTT CCACGACGAG GAGGGCCGGG TGGTGCTGGA CATAGGGTCC
GAGCAGATGG TGGAACACAA GGCGCAGGCC GCGCGGGAGG CCCTGGCCGA GAGCCTGCGG
CTTCTCTACG TAGCCCTCAC CCGGGGCAAG CACCGGACCT ACCTCACCTG GGGCGCCTTC
AAGGATGCCG GCGACAGCGC CCTGCACTAC CTGCTGCATC CGGGCCAGAC CCCGGTCAAG
GGACAGGTGA CGCTGAGCGA CGCCGACATC CGCGAAAGGC TCGACACGCT GGCCGCATCC
TCCGCCGGGA AGATCGAGGT GCTGGATCTC CCCGCGGCCG ACCTGGCGCC TTACCGGCCC
AACGACGAGA AGGCGCCGGA CCTGGCGCCG CTTCCCTTTA CCGGGGAAGT TTCCCGTGAC
TGGCGTGTGG CGAGCTTCAC CTCGCTCTCA AGCCACAAAC ACCACACAGC CGAGCTTCCC
GACCGCGACG AGGAGAGCCC CATCGAGGAG CGGCCGGGGC GTGATATCGA GCCGACCGGG
ATCTTCGCCT TTCCCAAGGG GGCCAAGGCC GGTATCTTCC TGCACAAGAT CTTCGAGGAC
CTCGATTTCA CAAGGGTGGG CGAGCAGCTC TCGCCCCTGG TCGAGGAGCA GTTGGACAAG
CACGGCTTCG CCCCCGATTG GAGCCAGGCC GTGCGCGACA TGGTGCAAAA CGTGCTGCAG
GCGCCGCTGG GAGACGGGGG GATCGCGCTG GCGCAGGTGG GGCTGGAGCG GCGCCTCACC
GAAATGGAAT TCTTCTTCCC TCTTTCGCAC GTCACCTCCG AGCGTCTGAG GGAAGCCGCC
GCCCGCTTCA CGGCCGGACA CGGCGCGGCC GGAGTCCCCG GGTTCCCGGT CGACCTGGCG
GATCTTTTCA GCCGCCTGTC CTTCGCGCCG GTGCAGGGGA TGCTGCTCGG CTTCATCGAC
CTCGTCTTCG AGCACGGCGG GCGCTACTAC ATCGTGGACT GGAAGTCCAA TCACCTGGGC
AACGCCCCGG GCGACTACGG GCAGGCGGCG CTGAAAAAGG AGATGGAAGA AAACTTCTAC
CCCCTGCAGT ACCTCCTCTA CACGGTGGCG CTCGACAATT ACCTGAGGCT CAGGATCCCG
GATTACCATT ACGACCGGCA CTTCGGCGGC GTCTTCTACC TTTTCCTGCG CGGCGTCGAC
GGGACGGGGA ACGGGGTCTA CGCCGACCGG CCGCCCAGGG AACTCATCGT CCATCTGGCA
GAGGTGCTGC TCCCTGAGAG CGCGAGACCG CCAGGGATAG GTGAACCAAG CCCCTCACCC
CAGCCCTCTC CCGCTGGGCG AGGGGGAGTT GGGAAAAAGC TGAAAAAAGC CGAGATAGAA
GGGCAGCTTA GCCTTGATCT CTTCGATTGA
|
|---|
| Protein sequence | MKRFDLLHTP LAGRNLIEAS AGTGKTFTIA GVYLRLVLEE KFDVSRILVV TFTEAATKEL
KERIRNKLKE AENGFLTGAA EDFLIDGLLK STPDHSEARR LLGSAVRSFD EAAIFTIHGF
CQRMLQDNPF ESGSLCDTEL VTDQGKILME IAQDYWRINC YGQPEDRIAA AGAAKVSPES
LLKLAQRVCG DPNAAVIPDP PDDATELDDW LQGLKRGFFD YLRAELPKRK RLKNLRSFDD
LLLDLHAALL RPASPLPRLI RERYQAALID EFQDTDPLQF AIFDAIYPVG HEAPFFLIGD
PKQAIYSFRG ADIFAYMGAA QATKERHTLL QNFRSEAGLI DAVNTLFASR ELPFLYPQIG
FNRVEAAPKE KSRLVEAGQR KAPLKLWLAP RKDAGKPINK GDAWEQLPET VAAEISRLLR
DGAAGKLTVE ELQKDAEESE KWVRRAVEPK DIAVLVRANR QAKLMQRALT RRGIPSVLCS
AGNLFESDEA AELLRLLSAV AQPGHESLLR GALATELVGV SGTELARLMN DEKGWEEILE
EFRGYHDTWN SGSCMSMALQ FMEKREVRKR LLAEPMGERR LTNLLHAIET MHQAQVNERL
GMEAVIAWLA CRITEEPKKE EYEIRLETDE AAVQLVTIHK SKGLEYPIVF LPFCWAEYAG
KDEGALFHDE EGRVVLDIGS EQMVEHKAQA AREALAESLR LLYVALTRGK HRTYLTWGAF
KDAGDSALHY LLHPGQTPVK GQVTLSDADI RERLDTLAAS SAGKIEVLDL PAADLAPYRP
NDEKAPDLAP LPFTGEVSRD WRVASFTSLS SHKHHTAELP DRDEESPIEE RPGRDIEPTG
IFAFPKGAKA GIFLHKIFED LDFTRVGEQL SPLVEEQLDK HGFAPDWSQA VRDMVQNVLQ
APLGDGGIAL AQVGLERRLT EMEFFFPLSH VTSERLREAA ARFTAGHGAA GVPGFPVDLA
DLFSRLSFAP VQGMLLGFID LVFEHGGRYY IVDWKSNHLG NAPGDYGQAA LKKEMEENFY
PLQYLLYTVA LDNYLRLRIP DYHYDRHFGG VFYLFLRGVD GTGNGVYADR PPRELIVHLA
EVLLPESARP PGIGEPSPSP QPSPAGRGGV GKKLKKAEIE GQLSLDLFD
|
|---|
| |