| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6741 |
|---|
| Symbol | |
|---|
| ID | 5675054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 8199843 |
|---|
| End bp | 8200694 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641245590 |
|---|
| Product | putative DNA processing smf-family protein |
|---|
| Protein accession | YP_001510981 |
|---|
| Protein GI | 158318473 |
|---|
| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000806567 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0643644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC CTGTGAATGC CGACCGGCGT GCCCGCGCCG CGCTGACCTG CCTACCGCCC
GACCGTCACC GCACCCAACG CATCCACCGC CACGGCCCCA TCACCGTCTG GGAGAGGATC
GCCGGCCGCT ACCCCGACAT CGACCCGGGC CGTCTCCTGG AGCAGGCCAC CGAGAGCGGC
TGGCGGCTGG TCATCCCCGG CGACCCCGAC TGGCCCGCCA CCCTCGACGT TCCCGGCCGG
CCGCTGGGCC TGTGGGTGCA CGGCGCCGGG GACCTCCCCG GGCTGCTGCG TCGGGCGGTG
ACCCTCACCG GCGCCCTCGC GGGAAGCGCC TACGGGCGCA CGGTCGCCGC CGACCTCGCC
ACCAAGCTGA CCACGCAGCC CGGTGGGGAG TCGGTCACGG TCGTCGCCCA CGGCGGCGGG
AACGGCACCG ACGTCGCCGC CCTGACCGCC GCCGCCCGCC GGCCGGCGGC GGTCGCGGTC
CTCGACACCC CCACCGATCT GTTCGGCCAG CCCGACCTGC TTCGTACGGT CGCCGCCGGG
GGGCTACTCG TCAGCGCCGC CGCGCCCGAC GCAAACCCCA CTCCCGGCCA TGTGCTGGCC
CGCATCGAGC TGCTCGCCGC TCTCGCTCAC GCCACCGTCC TCATCGAGGC CCGCGCCAGC
GACGACGACG CGCTTTCCGT CGCCTACACC GCCCACTTCC GGCGCCGCCG GCCGGTCCTG
GCTGTCCCCG GCCCGATCAC CGCCCTGGCC AGCGCCGGCC CGCACGCCCT CCTCCGCGAC
GGCACCGCCC GCTGCGTCAC CACCGCCGGC CACATCACCG CGCACCTCCC CGACCCGCCC
GCCCCCCGCT AA
|
|---|
| Protein sequence | MTDPVNADRR ARAALTCLPP DRHRTQRIHR HGPITVWERI AGRYPDIDPG RLLEQATESG
WRLVIPGDPD WPATLDVPGR PLGLWVHGAG DLPGLLRRAV TLTGALAGSA YGRTVAADLA
TKLTTQPGGE SVTVVAHGGG NGTDVAALTA AARRPAAVAV LDTPTDLFGQ PDLLRTVAAG
GLLVSAAAPD ANPTPGHVLA RIELLAALAH ATVLIEARAS DDDALSVAYT AHFRRRRPVL
AVPGPITALA SAGPHALLRD GTARCVTTAG HITAHLPDPP APR
|
|---|
| |