| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6740 |
|---|
| Symbol | |
|---|
| ID | 5675053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 8198924 |
|---|
| End bp | 8199775 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 641245589 |
|---|
| Product | SMF family protein |
|---|
| Protein accession | YP_001510980 |
|---|
| Protein GI | 158318472 |
|---|
| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00228077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.067475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTGA TCCTCAGCGA GCGGGAGCGG CGCGCCGTGG CCGCGCTGAC CGCCCTTCCG
CCCGACCGCG CCCGCACCGC CACCGTGCGC ACCCTCGGCC CGCTCCGGGT GTGGGAGACC
TTCGCCGGGA TGCGCCCCGG CCTCGACCCC GACCAGCTCC TCGACGCCCA CGCCGCGCTG
GGCTGGCGGC TGATCTGCCC CGGCGATCAC GACTGGCCCA CCAGCCTCAC CCCCGCCGGC
CCCGCCCCGC TCGCTCTGTG GGCCCACGGG CACGGACACC TGGCCGTGCT CGCGGCCCGC
GCGGTCGCGG TCACCGGCAA CCGCAGCGCC ACCCCCGCCG GCCTGAGCAC CGCCGCCCGG
CTCGCTCACG ACCTCGCCAC CGCGTCCCCG CCGGTCACCG TCACCGCCAC CCTGTCCCGG
GGGATCGCCC GCGCCGCGCT CACCGCCGCC GTACCCCACG CCCCCACCCT CGCGATCCTG
GTCGGGGACC TGCTGACCGA CCGCGCGCCC CACCCCGAGC TCCTCGCCGC CGTCGCCGCC
ACCGGCCTCG TCGTGAGCGA GATCCCGCCG CTGTGGGAGC CGGCAACCCC ACCCACCACC
CGCGACCGGG GCCGGCGCAA CACCGCCCGC GCCCGGCTGC TGGCGACCCT CACCCAGGCC
ACCCTGGTCC TCGAATCCGC CCCCGGCGGA GCCGGCATCG CCACCGCCCG CGCCGCCCGC
GCCCTCGGCC GCCCCCTCCT CACCATCCCC ACCCTCGGCG GAAACGGTGA CGCCGCCCGT
GCCCTGCTAC GCGGCAGGCT CGCCAGCCCC GTCACCACCG CCGCCGACAT CACCGCACAC
CTCCCCCACT AA
|
|---|
| Protein sequence | MPVILSERER RAVAALTALP PDRARTATVR TLGPLRVWET FAGMRPGLDP DQLLDAHAAL
GWRLICPGDH DWPTSLTPAG PAPLALWAHG HGHLAVLAAR AVAVTGNRSA TPAGLSTAAR
LAHDLATASP PVTVTATLSR GIARAALTAA VPHAPTLAIL VGDLLTDRAP HPELLAAVAA
TGLVVSEIPP LWEPATPPTT RDRGRRNTAR ARLLATLTQA TLVLESAPGG AGIATARAAR
ALGRPLLTIP TLGGNGDAAR ALLRGRLASP VTTAADITAH LPH
|
|---|
| |