| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6368 |
|---|
| Symbol | |
|---|
| ID | 5674684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7728567 |
|---|
| End bp | 7729211 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641245217 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001510612 |
|---|
| Protein GI | 158318104 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACCG TAGGAATTGT GACGGGAGCC GGCCGTGGCA TCGGCCTGGC GTGTGCCGAG
CGCATGGTCG ACACGGTCGA CTTACTTCTA CTCGTCGATC TCGACGGGCA GAACGTGAAG
GCCGCGGTCA CCGAGCTCGC GGGCCGCGGG CGAAGCGTCG TCGATCCCTT CCCGCTCGAC
GTCACCGATG TCGACGGGCT GGAGCGCCTG GCCGCGCACG TGGCCGAGTC CGGGGAGCTC
CGGGCGGTCG TGTCCGCGGC GGGGATCTCG CCGATGATGG GAGGCTGGAA GCGGGTGCTC
GAGGTCAACC TCGTGGCCTG CGCCCAGCTC AACCGGGTAC TGAGCCTGCA CGCCACCCGC
CGAACGGTGT TCGTGCATTT CGCCTCGCTG ATTCCGTGGA TCGGTATCGC CGCGTCCGAC
CCGGCGGCCG ACGCGGCCCT TGACGCCGCC CTCGAGGCCG ATTTCTTCGA GCGTATCCGC
GACGCCCTCG GGCCTGGCAT CGAGAACCCC GGCCTCGCCT ACGCCTGGGC GAAGCTCGGC
GTCATCCGCT TGGTCAGGCA CGAGGCCGGC CGGAGGAGGT GGCCGCGGTG GTGGCGTTCC
TGCTCTCGGA CGAGGTCAGC TTCGTCAACG GGACCGACGT CCTGA
|
|---|
| Protein sequence | MRTVGIVTGA GRGIGLACAE RMVDTVDLLL LVDLDGQNVK AAVTELAGRG RSVVDPFPLD
VTDVDGLERL AAHVAESGEL RAVVSAAGIS PMMGGWKRVL EVNLVACAQL NRVLSLHATR
RTVFVHFASL IPWIGIAASD PAADAALDAA LEADFFERIR DALGPGIENP GLAYAWAKLG
VIRLVRHEAG RRRWPRWWRS CSRTRSASST GPTS
|
|---|
| |