| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6113 |
|---|
| Symbol | |
|---|
| ID | 5674434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7439865 |
|---|
| End bp | 7440641 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641244965 |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|---|
| Protein accession | YP_001510363 |
|---|
| Protein GI | 158317855 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.196392 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGAT CCGCCGCCGG CGCACCCGGC GGCCCGCCCG CGACGGGGGG CGATCCGCGG
CGGCCCTGGG TCGTCGGGGT CAGCGGCGCG AGCGGAACGC CCTACGCCGC CGCCGTCCTG
CGTGGTCTGC TGGCCGCCGA TCTGCCCGTC GACATCGTGG TCTCCCGCGC GGCCCGGCTC
ACCCTGCTCG ACGAGACCGG CATCGGCTGG CGGGACGGCG CCTGGCGCGA CCCGCTGGCG
AGCTGGCTCC GCACCCGGCT CGACGGCCGG CCCCGCGCCG ACGCGGCCGA GGTGGCCGCC
CGCGTCGACC GCCTGGTGGA TGTCCACCCG CCCGACGACA TGGGCGCGCG TCCGAGCAGC
GGCTCCTACC CGACCCAAGG GATGATCGTT GTTCCGGCGA GCACCGCCTC GGTCGCCGGC
ATCGCCCTCG GCCTGTCCAA GGACCTGCTC CAGCGCGCGG CGGACGTCAC CCTCAAGGAG
GGCCGGCGCC TGGTCGTGGT GCCCCGGGAG ATGCCCTACA CCCGGGCCAC GCTGCGGCAC
ATGCTCGACC TGGACGCCGC CGGTGCCGTT GTGGCCGCGG CCAGCCCCGG CTTCTACGCC
GGCGCCCGCG CCGCGGAGGA CCTGGTGGAC TTCGTCGCCG GCCGGGTTCT CGACGCCGCC
GGCGTCCCCA ACACCCTGTT CCGCCGGTGG ACGGGCGAGC TCGGCGCCGC CCGCACCGCC
CCGGCGCGTA CAACAGACCT GGGGGACGGG CCGCGGCGCG CCCCGACCAG CGGATAA
|
|---|
| Protein sequence | MSRSAAGAPG GPPATGGDPR RPWVVGVSGA SGTPYAAAVL RGLLAADLPV DIVVSRAARL
TLLDETGIGW RDGAWRDPLA SWLRTRLDGR PRADAAEVAA RVDRLVDVHP PDDMGARPSS
GSYPTQGMIV VPASTASVAG IALGLSKDLL QRAADVTLKE GRRLVVVPRE MPYTRATLRH
MLDLDAAGAV VAAASPGFYA GARAAEDLVD FVAGRVLDAA GVPNTLFRRW TGELGAARTA
PARTTDLGDG PRRAPTSG
|
|---|
| |