| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5944 |
|---|
| Symbol | |
|---|
| ID | 5674265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7245544 |
|---|
| End bp | 7247322 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641244792 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001510194 |
|---|
| Protein GI | 158317686 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.115226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGG TGCGTCTTCT CGCCGACGAG CCGAACGTCC GCGGCGCGGG GCGCGGGGCG
CTGCGCCACC TGCGCCCGCA CCGGCGGATC CTGGTGCTGG CGATCATGGG CACGATCGCC
AGCACCGCCT CCCTCGTCGC GATCGCGCCG GTCGTCGGCC GCGGCGTCGA CGCGGTGCTC
GCGCACGACC GCACGGCGCT GTGGGTGTCG GTCGCCCTGC TCGTCGTGGT CGTGCTCGCC
CGCCTGCTCC TGCTGCGGTG GTCGGAGGTG GTGCTCGCCC GCGCGGGCGA ACGGATCGTG
CACGACCTGC GCGATCTCGT GGTGGAGCGG CTGGCGAGCG CCCCGCTGCG GTTCGTGGAG
GCGCATCGGA CCGGTGACCT GCTCCGCCGG GCCACCGGCG AGATCGCCGA CCTGTCGCTG
TTCATCCGGG AGCAGTTGCC CAACCTGCTC GGTCTCGCAC TCACCGTCGT GCTGACGACG
GCCGTCCTGA TCGTGTACTC GCCGTTGCTG TCCCTGGTGC TCGTGCTGCT GTTCCTCCCC
GCCGCGGTGG GGGTCATCCG GTGGTTCAAC GCCTCGGCCA AGGTGGTCTT CGGGCGGCAG
GCCGCGGCCG ACGCCGCGAT GACCGCGACC TTCACCGAGA CCCTGGCGGC CGGTGAGGCT
CTGGTGGTGG CCGGGCGGCC GGGCGAATGG GTGAACCGGT TCCGCCGCGA CAACGACGAG
CTGCTGCGGG CGTCGAACGC GACGATCGGT GCTCAGAACC GGCTCGAGCT GTTCAACCTC
CTCGAAGGGC TGGCGACCGC GGTCCTGCTG CTGCTGAGCG TGTGGCTGGC CCGGGCCGGC
CACCTCGGGG TCGGCACGGT CGTGGTGTTC GTGCTCGCGA CCCGCAACCT GTTCGACGGA
ATGATGGGGC TCTCCCGGCT GGTCGGCGAG CTGCAGACCG CCAAGGTGGG CCTGGCCCGG
CTGGCCGACC TGCTGGGCGC GACCGAAGCG GCCCAGACAG CCGCCGCGCG GGCGGTGCTG
CCGCCGCGGG GCGAGCTCGT CGCGAACGGC GTGCGCTTCG GATACGCGGA GGGCGACGAC
GTGCTGCGCG GCGTCTCGGT GCGGTTCCCG GCTGGTGACC GCGCCGGCCT GGTGGGCAGC
ACCGGCTCCG GGAAGACGAC GCTCGCGAAG CTGCTGTGCG GCCTTTACCA GCCGGACGCC
GGCCTGGTGA CGTTCGGCGG GGTCGACCTG CGGACGGTCC CGGCAGCCGA GATCCGCCGG
CGGATCGTCC TCGTCCCCCA GCAGGTCCAC ATCATCACCG GAACGCTGGC GGAGAACCTG
GCGCTGGCCC CGGGCGAGCC GGACCGGGCG GCGATGGAGC GGGCGGTGGA GGCCCTCGGC
CTCACCGAGT GGGTGGCCGG GTTGTCCGGC GGGCTGGACG CCTCCGTCGG CTCGCGCGGG
GAGCTGCTGT CCGCCGGTGA GCGGCAGCTC GTCGGCCTGG TGCGGGCCGC TCTGGTCGAC
CCGCCGGTGC TGCTGCTCGA CGAGGCCACC GCCGATCTGG ATCCCGCCGT CGCGCGGCGG
CTCGAGACCG CGGTGGAGCG CATCCGCCCC GGACGGACGC TGATCGTCAT CGCGCACCGG
CAGTCCACCA TCGACCGGCT GCCGCGGCGG GTGCGCCTTG CGTCCGGGCT GATTGTCGCC
GGTGATGTGG CCGGTGTTGT GTCCGGCGTG GTTGACGAGC CAGGTTTCTC TGTACCCGGT
CAGCCACAGA ACGGGCACGT CACAACCGAT CGGTCGTAA
|
|---|
| Protein sequence | MAEVRLLADE PNVRGAGRGA LRHLRPHRRI LVLAIMGTIA STASLVAIAP VVGRGVDAVL
AHDRTALWVS VALLVVVVLA RLLLLRWSEV VLARAGERIV HDLRDLVVER LASAPLRFVE
AHRTGDLLRR ATGEIADLSL FIREQLPNLL GLALTVVLTT AVLIVYSPLL SLVLVLLFLP
AAVGVIRWFN ASAKVVFGRQ AAADAAMTAT FTETLAAGEA LVVAGRPGEW VNRFRRDNDE
LLRASNATIG AQNRLELFNL LEGLATAVLL LLSVWLARAG HLGVGTVVVF VLATRNLFDG
MMGLSRLVGE LQTAKVGLAR LADLLGATEA AQTAAARAVL PPRGELVANG VRFGYAEGDD
VLRGVSVRFP AGDRAGLVGS TGSGKTTLAK LLCGLYQPDA GLVTFGGVDL RTVPAAEIRR
RIVLVPQQVH IITGTLAENL ALAPGEPDRA AMERAVEALG LTEWVAGLSG GLDASVGSRG
ELLSAGERQL VGLVRAALVD PPVLLLDEAT ADLDPAVARR LETAVERIRP GRTLIVIAHR
QSTIDRLPRR VRLASGLIVA GDVAGVVSGV VDEPGFSVPG QPQNGHVTTD RS
|
|---|
| |