| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5862 |
|---|
| Symbol | |
|---|
| ID | 5674185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7111210 |
|---|
| End bp | 7112787 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 80% |
|---|
| IMG OID | 641244712 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001510114 |
|---|
| Protein GI | 158317606 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000662704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.168546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGGA TCGTGGTGCC GGCCGGGGTG GCGTGCCTGG TCGGGGTGGT CGCGGCCCTG
CTCACCACGG CGGGGCCTCG TCCGCCCGCA GCCGTCCCCA GACCGGTCAC CGCGGCCACC
CTGGACTGCC CGGATCTCGG CCTGAGGGGG CAGGTGCCCC AGCTGCTGGA CGTCGTGCGC
GGCTCGGGGC CCGACGGGGT GGTCCGGCCA TCCGGTGGCG GCGCGCTGCT CGGCGGCGAC
CGCCAGCACG ACGAGCTGCT CTACCTGCCG CGTCCAGACC CGGGTGGCCC AACTCCGGGC
GGCCCGGCTC CGGGCCGCAC GGACCTGGAC GGGCCGGACA GCGGCCAGTC GGTGGCACGG
GGGCCTGCCG GCGGTCCGTT GCGGCTTGTC GCGACCGGGT CCGCCGCGGC CGGCCTCACC
GCGACCGTGA CCTCCCCCGG GTCGGGAGCG GGACCGTTGC GAGCCCGCTG CGAGCAGTCC
CGCGCGCGGA CGTGGTTCGC CGGCCCGGCC ACCGTCGCCG GCCGCGATCC CGTCCTGTAC
TGGACGAACA CCGGTCCGCG GCCGGCCCGG GTCAGTGTGG GCGCCGTGTC GTCGGGCCAG
ACGGCGCCCC GGGTGGAGGT GACCGTTCCG GTCGGGCGCA CGGTCAGCCG GCGCCTGGCC
GAGCTCGCCC CCGAGGCGAC CGTGACCACC GTCGACGTCG ACGTGCACAC CGGCCGGGTC
CTGAGCTGGA TGGTCGACCG CGCGAGCGGC TCCGGGCCGG CGGCGGCCAC GCCCGTGCCG
CCGACCGCCG GTCCGGCCAC CCGGGTCCTG CTCGGCGGGT TCCTCACTCC TGCCGGGTCC
GGCGGTACGG GGGCACCGGC CGCCGGCCCG CCAACGGCCG ATCTCGTGCT CTCCGCTCCC
GGAGCGGCGG CGACCGTACG CGTCAGTGTG ATCACGGCCT CGGGTCGCCA CACCCCGGTC
GGCCTGGAGG CCGTGCGGAT CCCGGCCGGC GCGGCGCTGC GCCGCCTGGT CACGCTGACT
CCGGCGAGTC CGTCCGCCCT GCTGGTCGAG TCGACGGACG GGGGCGGGAT CGTCGCGGCG
CTCGGCCTGC CCACCGGCGT GGCCGCGGCG GCCCCCGCGG CGCCGGGCAG CGGTCCGCCG
AACGGGCGTA CCTGGGTCGC CGGGGTCGTT CCGGAGCGGC CCCGCTGGGC GGGCGTCGTC
GTCGGCGACC CGGGCGCGGC CGGGCCGACA CCGCCGGGTC TGGTCGTCGC GGCGGCGCCG
GTACCGGCCT GGACGGCCGG CGCGCTCGTC CTGGTGGCGC CCCGGCGGGC CGCCACCGTC
TGGGTCGACG GCCGCCGGTT CGAGGTCGGC GCGGGTCGCG CGGTGCTGGC GCCGCTGCCG
GCGGGCCGCG TCGGCGCGCG TGTCGTCGGC ACCGGCGGCC CGCTCGTCGC GAGCCAGGTC
CTCGGCACCG CGCCGCCGTC CGCGGGAGTG GTGACCGCGC TGGTGCCGCG GACCGTCTCG
GCCGTCGTGC CGCTTACTGG CGCGTGGCGC CTCCGGTACG GTCCGGCGTC GCTGGCCGAT
CCGCGCGTCG CCTGGTGA
|
|---|
| Protein sequence | MKRIVVPAGV ACLVGVVAAL LTTAGPRPPA AVPRPVTAAT LDCPDLGLRG QVPQLLDVVR
GSGPDGVVRP SGGGALLGGD RQHDELLYLP RPDPGGPTPG GPAPGRTDLD GPDSGQSVAR
GPAGGPLRLV ATGSAAAGLT ATVTSPGSGA GPLRARCEQS RARTWFAGPA TVAGRDPVLY
WTNTGPRPAR VSVGAVSSGQ TAPRVEVTVP VGRTVSRRLA ELAPEATVTT VDVDVHTGRV
LSWMVDRASG SGPAAATPVP PTAGPATRVL LGGFLTPAGS GGTGAPAAGP PTADLVLSAP
GAAATVRVSV ITASGRHTPV GLEAVRIPAG AALRRLVTLT PASPSALLVE STDGGGIVAA
LGLPTGVAAA APAAPGSGPP NGRTWVAGVV PERPRWAGVV VGDPGAAGPT PPGLVVAAAP
VPAWTAGALV LVAPRRAATV WVDGRRFEVG AGRAVLAPLP AGRVGARVVG TGGPLVASQV
LGTAPPSAGV VTALVPRTVS AVVPLTGAWR LRYGPASLAD PRVAW
|
|---|
| |