| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5181 |
|---|
| Symbol | |
|---|
| ID | 5673515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6219026 |
|---|
| End bp | 6219598 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641244035 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001509445 |
|---|
| Protein GI | 158316937 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.752009 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTGACC ACTACCTTGA GGTCGTGACC CCAAGGACGA CCGGCGGCAC CGGCACCCGG
ATGAGCGCGG AGCAACGACG CGCGGTGGTG CTCGCGGCGG CCGTCGAGGA GTTCGCCCTG
GGCGGCCTGA CCGGCACGTC CACCGAGGCG ATCGCCAGCC GTGCCGGCAT CTCCCAGCCC
TATCTGTTCC GACTCTTCCC CACCAAGAAG GAACTGTTCC TGGCGGCCGT CCGGGCCACC
TTCACCCTGA CTCGCGAACG CTTCGAGACC GCGGCGGGCG ACCTGGTCGG CGCCGACGCC
CTGACGGCGA TCGGGTCCGC CTACGACGAG CTGCTCACCG ACCGCACCTA CCTGCTCATG
CAGATGCAGA GCTACGCCTC CTGCGGCGAC CCGGGCATCC AGGAGGTCAC CCGCCAGGGT
TTCCGGGACC TGTGGCAGAC CGTCGAACGC GTCAGCGGAT GCGACGACGA GGAACTGCGC
ACGTTCTTCG GGCACGGCAT GCTGCTCAAC GTCGTGGCCG CGATGAACCT GCAGGAGATC
AGCGACCGCT GGGCCCGGGA GATCTGCAGC TAG
|
|---|
| Protein sequence | MSDHYLEVVT PRTTGGTGTR MSAEQRRAVV LAAAVEEFAL GGLTGTSTEA IASRAGISQP
YLFRLFPTKK ELFLAAVRAT FTLTRERFET AAGDLVGADA LTAIGSAYDE LLTDRTYLLM
QMQSYASCGD PGIQEVTRQG FRDLWQTVER VSGCDDEELR TFFGHGMLLN VVAAMNLQEI
SDRWAREICS
|
|---|
| |