Gene Franean1_4904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4904 
Symbol 
ID5673244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp5890702 
End bp5891232 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content73% 
IMG OID641243759 
ProductTM2 domain-containing protein 
Protein accessionYP_001509175 
Protein GI158316667 
COG category[A] RNA processing and modification 
COG ID[COG5178] U5 snRNP spliceosome subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.097022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00581278 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCACGC CAGGACAGCC GCCCAGCTAC GGCGAGGGCT ATCCCGGCCA GGGCCAACCC 
GGTCCGGACC TCTCGAAGAA CACCGGCTAC GGACCGCCAC CCGGCGGATA CCCGCCCGGC
CAGCCCGACC CCGGCTACGG GCCCCCGACC GGCGGGTTCC CCTCTGGCCA GCCGGAACCC
GGCTACGGCC CGCCGCCGGG ATACCCGCCC CCGCCGGGCT ACGCGCCCGG GTACGGGCCG
CCGCCCGGGT ACCCCGGCGG CTACGGGCCG GGTGGTTTCG ACCAGTCCGC GCCCTTCGGC
CGGCACCCGA TCACCGGTGA GCCCTACTCG GACAAGCAGA AGATCGTCGC CGGTCTGCTA
CAGATCTTCG CCGGCTGTTT CGGCGTCGGA CGCTTCTACC TCGGCAGCAC GGGCATCGCG
GTGGCCCAGC TCCTCACCTG CGGCGGCCTG GGCGTCTGGG CGCTGGTGGA CGGCGTGATG
ATACTCACGG GCAACGTCCG CGACCAGTAC GGCCGTCCGC TGCGGGACTG A
 
Protein sequence
MTTPGQPPSY GEGYPGQGQP GPDLSKNTGY GPPPGGYPPG QPDPGYGPPT GGFPSGQPEP 
GYGPPPGYPP PPGYAPGYGP PPGYPGGYGP GGFDQSAPFG RHPITGEPYS DKQKIVAGLL
QIFAGCFGVG RFYLGSTGIA VAQLLTCGGL GVWALVDGVM ILTGNVRDQY GRPLRD