| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4729 |
|---|
| Symbol | |
|---|
| ID | 5673071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5645217 |
|---|
| End bp | 5646041 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641243586 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001509002 |
|---|
| Protein GI | 158316494 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGT TCGACGCCTT CCGGTACGAC GGGAAGCGGG TCCTCGTCGT CGGCGGCGCG
ACCGGCATGG GTGCGGCCAC CGCCGAGCTG GCGCAGAGCG CCGGCGCCGA GGTCGTGGTT
ATGGACTACG CCGAGGTCAC GCTGCCGGGC GCCAAGTCCA TCCACGTCAA CCTGGCGGAC
GCGGCGTCGA TCGACGCGGC CGTCGAGCAG GTCGGAGGGC CGGTCCACGC GCTGTTCTCC
GCCGCCGGTG TCGCCGACGG CACGGCCGGC ATCGAGCGGA TCAACTTCAT CGGCCACCGG
TACCTGATCG ACCGGCTGCT GGCCGGGGGA CTGCTGCCCC GCGGCTCGGC CATCGGCTTC
ATCTCGTCGG CGGCCGGCCT CGGCTGGGAG GGCAACCTCC CGCTGCTCAA GGAATTCCTC
GATATCACCG ACTTCGACGC GGCGACACAG TGGGTCCACG AGCATGGCAA GGCCGACTAC
ATGTGGAGCA AGCAGGCGGT CTGCGCCTAC GTGGCTCGCG AGTCGTTCGC GCTGCAGAAG
CAGGGCATCC GCGTCAACGC CATCTGCCCC GGCCCGACCG ACACCCCCCT GGCGCAGGCC
AACAAGGAGA TGTGGCTCGG CTTCGGCGCC GACTACCGGG CCGAGATCGG CATCGAGGCG
GCGACGTCGC TCGAGCAGGC CTACCCGCTG CTGTTCCTCT GCAGTGACGC CGCCGCGGCG
ATCAGCGGGA TCACCGTCGT CACTGACGCG GGCTACTGCA GCGCCGGCAT CACGGGGTCG
TACCCGGCTG CGGAGCAGAA CGTGCGCTTC TTCTTCGGCC GGTAG
|
|---|
| Protein sequence | MTLFDAFRYD GKRVLVVGGA TGMGAATAEL AQSAGAEVVV MDYAEVTLPG AKSIHVNLAD
AASIDAAVEQ VGGPVHALFS AAGVADGTAG IERINFIGHR YLIDRLLAGG LLPRGSAIGF
ISSAAGLGWE GNLPLLKEFL DITDFDAATQ WVHEHGKADY MWSKQAVCAY VARESFALQK
QGIRVNAICP GPTDTPLAQA NKEMWLGFGA DYRAEIGIEA ATSLEQAYPL LFLCSDAAAA
ISGITVVTDA GYCSAGITGS YPAAEQNVRF FFGR
|
|---|
| |