| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4587 |
|---|
| Symbol | |
|---|
| ID | 5672934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5469308 |
|---|
| End bp | 5470540 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641243450 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001508866 |
|---|
| Protein GI | 158316358 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.187372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTAC CGATGCAGGG CATCCGAGTG CTCGAGGTGG CCCAGTTCAC CTTCGTCCCG
GCGGCGGGTG CGATCCTGGC GGACTGGGGC GCCGACGTCA TCAAGGTCGA GCACGCCGTG
CGCGGCGACG GACAGCGCGG GCTCACGAAC GTCCTGGGTG TCGACGCGAT CGCGAAGGGC
AGCAGCTTCT CGCCGATCGT CGAGGGGCCG AACCGGGGCA AGCGCAGCGT CGGGCTGGCG
CTGGAGAACC CGCAGGCCCG CGAGCTCCTC GACGATCTGA TCAGGCAGAG CGACGTCTTC
CTGACCAACT TCCTGCCCGA CGCGCGCGCC AAGCTGCGGA TCGAGCTCGA CGACGTCCGC
AAGGTCAACC CGGAGATCAT CTACGTGCGC GGCTCCGGCT TCGGCACCCG CGGCCCCGAG
GCGGGCAAGG GCGGCTACGA CATGACCGCC TTCTGGGCCC GTGCGGGCGG CGGCGCGGGA
GCCACCCCGC CCGGCGCCGA CCGGCTGGCC CCGATGCCCG CGGGCGGGTT CGGCGACAAC
ATCGGCGGCA TGACCATCGC CGGCGGCGTC GCGGCGGCCC TGTTCGCCCG TGCCACCACG
GGGGAGACCT CGGTCGTCGA CGTGTCCCTG CTGGGTGTCG GGGCCTGGGC GACGCAGTTC
ACCGTCAACC TGGCGCTGAT GGCCGGCGGC CCGCCGCCGC GGCCGCCCGC CCCGCGGCAC
GGCTCGGCGC GCAATCCGCT GGTCGGCCCG TACCGCACCG CCGACGACCG GTGGCTGCTG
TTCTCGATGC TGCAGCCCGG TCGCTACTGG GCGGAGTTCT GCGAGGTCGC GGGGCGGCCG
GAGCTCGTCT CCGACGAGCG GTTCGACACG GTCGAGAAGC TGATGGACCG GGCGCCCGTG
GCGGCCGAGA TCGTCTCGGA GATCATCGGC GGGCGGACCC TCGAGGACTG GCTGGCCAGG
CTCGCGCACA TCGAGGGCCA GTGGGCCGTC GTCCAGGACG CCTGGGGCGT GGCCAACGAC
GTCTCGCTGC GGGCCAACGG AATGATCACG ACGGTCGAGG ACGCCGAGGG CGTGCCCAGG
GAGCTGGTGG CCAGCCCCGT GCAGTTCGAC GAGCAGGCGG CCGCGTTGCG CCGGGGTCCG
CTGTTCGCCG AGCACACCGA CGACGTCCTG CGCGATCTCG GGCTCAGCGA CGAACGGCTG
ATCGAGCTCA AGCTGGCCGG TGCGATCACC TGA
|
|---|
| Protein sequence | MQLPMQGIRV LEVAQFTFVP AAGAILADWG ADVIKVEHAV RGDGQRGLTN VLGVDAIAKG
SSFSPIVEGP NRGKRSVGLA LENPQARELL DDLIRQSDVF LTNFLPDARA KLRIELDDVR
KVNPEIIYVR GSGFGTRGPE AGKGGYDMTA FWARAGGGAG ATPPGADRLA PMPAGGFGDN
IGGMTIAGGV AAALFARATT GETSVVDVSL LGVGAWATQF TVNLALMAGG PPPRPPAPRH
GSARNPLVGP YRTADDRWLL FSMLQPGRYW AEFCEVAGRP ELVSDERFDT VEKLMDRAPV
AAEIVSEIIG GRTLEDWLAR LAHIEGQWAV VQDAWGVAND VSLRANGMIT TVEDAEGVPR
ELVASPVQFD EQAAALRRGP LFAEHTDDVL RDLGLSDERL IELKLAGAIT
|
|---|
| |