| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4340 |
|---|
| Symbol | |
|---|
| ID | 5672695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5184151 |
|---|
| End bp | 5184993 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641243213 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001508630 |
|---|
| Protein GI | 158316122 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0293254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAACG AGGTACTGGT GGTCATCGGC ACGGGCGGCA TGGGTGTCGC CGTAACCCGC
CGGGTCGGCA CGGGCAAGAC GGTACTGCTG GCCGACTACA ACGAGACGGC GCTGAACGCC
GTCACCGAGA ACCTCCGCGA CGAGGGCCAG CAGGTGACAG CCCAGGTCGT GGACGTGTCG
TCCCGGGAGT CCGTGTACGC GCTCGCACGG GCCGCCGCGG CCCTCGGCCC GGTGCGGCAC
GTGGTCCACA CCGCGGGGCT GTCCCCCACG CAGGCGCCGG TCGACGCGAT CCTGAAGGTC
GACCTGCTCG GTACCGCGCT GGTGCTCGAC GCGTTCGCCG AGGTCGTCAC CGTGGGCGGC
GCCGGCGTGG TCATCTCGAG CATGTCCGGC TACCTCGCTC CCCCGCCGGC CCGCGAGATC
GAGGCTCAGC TGGCCAACAC CGCCACCGAG GAGCTGCTGA ACCTGCCGTT CACGGCGGTG
GACGCGTTCC CGAGCGCGGG TTATGCCTAC TCCTTCGCCA AGCGGGCCAA CCAGCTGCGG
GTGCGTTCGG CCAGCAACGC GTGGGGCGCA CGAGGCGCCC GGGTCAACTC GATCAGTCCT
GGCGTCATCT CGACGAAGAT GGGACAGCAG GAGCTCGCGA GCGAGTCCGG CGCTGGTATG
CGCGCCATGG TGGCGGCGTC CGGCACCGGC CGGCTCGGCT CGGCGGACGA CATCGCCGCC
GCCGTTGACT TCCTCCTGTC GGACAACGCT TCGTTCATCA CCGGAATCGA CCTGCTCGTC
GACGGAGGCG CGGTCGCCGC CGTCTCGACG GGCCGGGTCG ACCTGTTCGC CGCGAGGAGC
TGA
|
|---|
| Protein sequence | MPNEVLVVIG TGGMGVAVTR RVGTGKTVLL ADYNETALNA VTENLRDEGQ QVTAQVVDVS
SRESVYALAR AAAALGPVRH VVHTAGLSPT QAPVDAILKV DLLGTALVLD AFAEVVTVGG
AGVVISSMSG YLAPPPAREI EAQLANTATE ELLNLPFTAV DAFPSAGYAY SFAKRANQLR
VRSASNAWGA RGARVNSISP GVISTKMGQQ ELASESGAGM RAMVAASGTG RLGSADDIAA
AVDFLLSDNA SFITGIDLLV DGGAVAAVST GRVDLFAARS
|
|---|
| |