| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4320 |
|---|
| Symbol | |
|---|
| ID | 5672675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5160903 |
|---|
| End bp | 5162309 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641243193 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001508610 |
|---|
| Protein GI | 158316102 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.548307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.65534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGCTCC GTCCGAGCGT GTCGGCGGGC CGCGGCCGGC GGCGTCCGGC GGCAGCCCGT
CCCGGGGGCA CCCGACACGG GCGCCGGGCT GTCCCTGGAC CGACTCGAGT AGAAGCTGGT
ATCGACGTCA ATGTTAAATA CTTGTCGGCC GGCAGGAACG CCGACCGCTT CCTGGGCGGG
AGGGGTTTCA TGACCGCGGT GATGCAGGGT GTACGGATTC TCGAGGTCGC TGAGCACACG
TTCGTACCCG CTGCGTCCGC GTTGCTGTCG GACTGGGGCG CCGACGTCAT CAAGATCGAG
CACGTCGAGC GTGGGGACGC GATGCGCGCG CTGGCGTCCT CGGGTGTCGC GGTCGTCCCG
AAGGACGTCC ACGTGCTGTT GGAGCACTCC AACCGTGGCA AGCGCAGCCT CGGCCTCGAC
CTGACCTCCC AGGCCGGCCG CGACATCCTC TACAAGCTCG CCGGCACCTG CGATGTGTTC
CTGACGAACA AGCTGCCCAG CGTGCGTACC AAGCTGCATG TTGATGTCGA GGACATCCGC
GCCCACAACC CGAACATCAT CTACGTCCGC GGGACCGGGC AGGGCGAACG CGGGCCGGAC
GCTGACCGTG GCTCCTACGA CTCGCTGGCC TTCTGGGCCC GCGCCGGCGT CGCGGTCGGC
AGCATGCGCC CGGAGTACAG CCATGTCCCG GTCCCGCCCG CGCCCGGTTT CGGTGACTCG
ATCGGCGCGA TGACGATCGC CGGCGGGATC ATGGGCGCGT TGTTCCACCG CGAGCGCACC
GGTGAGGCCA CCGAGGTCGA CGTCTCCCTG ATGGCCACCG GGATGTGGGC GATGGGTCAG
GCCCTCGCCC TGTCGCTGCT GCTCGACATC CCGTGGACCC CGCCGCCGCT GGACGCGCCG
CGTTCCAACC CGCTGACCGG GAACTACCAG ACCAAGGACG GCCGCTGGCT GTCGTTCACC
TGCCTGCAGG CCGGGAAGTA CTGGGCGCCG ATGTGCGAGG CCATCGGGCG TCCCGAGCTC
GGCGCCGACC CGCGTTTCGT CGACCACGCC GCGCTGATGG CGAACAGCCG GGAGGCCATC
GCGATCCTCG AGGCCGCCTT CGCCGAGCAC CCGCTGGCCG AGTGGCGTGA GCGGTTGGCG
ACCTTCATCG GCCAGTGGAC GGTCGTGCAG GACACCCTGG AGGCCGCCGC GGACCCGCAG
GCCGTCGCCA ACGGGTACGT CCAGGACTGC GCCACCGCCG CCGGCATCCC GTTCCGGATG
GCCGCCGCCC CGGTGCAGTA CGGCGGGAAG CCCGCGCCGG CGGGCCGGGC GCCGCTGTTC
AACGAGCACG GCGACGAGAT CCTCACCGAG CTCGGACTCG ACACCGACGC CGTCCTCGAC
CTCAAGATCC GCGGCGTCGT CGCATGA
|
|---|
| Protein sequence | MRLRPSVSAG RGRRRPAAAR PGGTRHGRRA VPGPTRVEAG IDVNVKYLSA GRNADRFLGG
RGFMTAVMQG VRILEVAEHT FVPAASALLS DWGADVIKIE HVERGDAMRA LASSGVAVVP
KDVHVLLEHS NRGKRSLGLD LTSQAGRDIL YKLAGTCDVF LTNKLPSVRT KLHVDVEDIR
AHNPNIIYVR GTGQGERGPD ADRGSYDSLA FWARAGVAVG SMRPEYSHVP VPPAPGFGDS
IGAMTIAGGI MGALFHRERT GEATEVDVSL MATGMWAMGQ ALALSLLLDI PWTPPPLDAP
RSNPLTGNYQ TKDGRWLSFT CLQAGKYWAP MCEAIGRPEL GADPRFVDHA ALMANSREAI
AILEAAFAEH PLAEWRERLA TFIGQWTVVQ DTLEAAADPQ AVANGYVQDC ATAAGIPFRM
AAAPVQYGGK PAPAGRAPLF NEHGDEILTE LGLDTDAVLD LKIRGVVA
|
|---|
| |