| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4296 |
|---|
| Symbol | |
|---|
| ID | 5672651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5133779 |
|---|
| End bp | 5135005 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641243169 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001508586 |
|---|
| Protein GI | 158316078 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAA CGGACGAACG CACCCTCGGC GGCACCGCGG GCGGCGGGCC GCGCCCGCTG
GAGGGGCTGC TCGTCGTCGG TCTTGAGCAG GCCGTTGCGG CACCGATCGC CACCCGGCAC
CTCGCCGACA TGGGCGCCCG GGTGGTGAAG GTTGAGAACC CGCGCGGCGG GGACTTCGCG
CGCCACTACG ACGGCGCGCT CAACGGGATG GCGGCCCACT TCGTGTGGGT CAACCGCGGC
AAGGAGTCGC TGACCCTCAA CCTCACCGAC CCGCGGGGAG CCGAGGCGCT CGAGCGGCTG
CTGGGCCGGG CCGACGTCCT CATCCAGAAC CTCGCCCCCG GGGCGGCGGC CCGGCGCGGC
CTGGCCGCCG AGCAGGTGGT CGCCCGCCAT CCGCGGATGG TCGCGGTCGA CATCTCCGGC
TACGGCGAGG GCGGGCCGCT GTCCCACAAG CGGGCCTACG ACCTGCTGGT GCAGTCCGAG
GGCGGGTCGT GCTCGGTGAC CGGCGAGCCG GGCCGGCCGG CCAAGGCAGG CATCCCGATC
ATCGACCTCG CCACCGGCAT GTACGCCCTG AGCTCGATTC TCGCGGCCCT CTACGCCCGC
CGGGAGACCG GGCGTGGCTC GGCGATCTCG CTCAGCCTCT TCGACGTCGT CACGGAGTGG
ATGGGCTACT CCCTCAACTT CACCATGGGC ACCGGTGTCG AACAGCAGCC GGCCGGGGTG
GGCTCGCCCG CCGTCGCGCC CTACGGCGCC TACCCGACGG CGGACGGCCA GACCGTCGTC
CTCGGCACCA CCAACGACCG GGAATGGCAG CGGCTGGCCC GCACCGTCCT CGACCGGCCC
GACCTGGCGG ACGACCCGGC CTTCGCCGGC AACGCCGACC GGGTGCGTGA ACGCGCCCGC
CTCGACGAGG TGATCATCGC CTGGTCGAAG AGCGTCACCC TCGTGGAGGC CCAGGAGATC
CTGGACAACG CCGAGCTCGG CAACGCCCGG CTCAACGGCG TCCAGGACGT CCTGGACCAC
CCGCACCTGC GCGAACGCGA CCGTTGGCAG GATGTCTCGA CTCCCACCGG CTCCGTCCGA
GCCCTGCTGC CTCCGCCGAT CGCCGCCGAG TGGACGCCCC CGATGGGCGC GGTACCCGCC
CTCGGCGAGC ACACCGACGC CCTCCTCGCT GAGCTGGGCT ACCCGACTGA GGAGATCGCC
GCCCTGCGCC GCGACCGGGT GGTGTAA
|
|---|
| Protein sequence | MTATDERTLG GTAGGGPRPL EGLLVVGLEQ AVAAPIATRH LADMGARVVK VENPRGGDFA
RHYDGALNGM AAHFVWVNRG KESLTLNLTD PRGAEALERL LGRADVLIQN LAPGAAARRG
LAAEQVVARH PRMVAVDISG YGEGGPLSHK RAYDLLVQSE GGSCSVTGEP GRPAKAGIPI
IDLATGMYAL SSILAALYAR RETGRGSAIS LSLFDVVTEW MGYSLNFTMG TGVEQQPAGV
GSPAVAPYGA YPTADGQTVV LGTTNDREWQ RLARTVLDRP DLADDPAFAG NADRVRERAR
LDEVIIAWSK SVTLVEAQEI LDNAELGNAR LNGVQDVLDH PHLRERDRWQ DVSTPTGSVR
ALLPPPIAAE WTPPMGAVPA LGEHTDALLA ELGYPTEEIA ALRRDRVV
|
|---|
| |