| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4200 |
|---|
| Symbol | |
|---|
| ID | 5672555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5001590 |
|---|
| End bp | 5002030 |
|---|
| Gene Length | 441 bp |
|---|
| Protein Length | 146 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641243073 |
|---|
| Product | cold-shock DNA-binding domain-containing protein |
|---|
| Protein accession | YP_001508490 |
|---|
| Protein GI | 158315982 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0910872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.749922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTACGG GAAAAGTACT TCGTTTTGAT CATGTGCGTG GCTACGGGTT CCTTGCGCCC
AGCGACGGCG GCGAGGATGT CTTCCTGCAC GCGAACGATC TCCTCGTCGA GAAGAGTCTG
GTAGTGCCGG GCGTGGTTAT GGAGTTCGAG GTCGAGGAGA GCGACCGCGG CCGGAAGGCG
TCGGCGGCCC GGATCCTGCG GGGCTCGGCG ACGGGCTCGG TCGTCGGGCC GGCGGCCGTC
ACGACCGCCC CGGCGCCGGT GGTCTCCCGC CACGACGATG GCGGCGACGG GCTGTGCGAC
GTCCTGCCGG CCGAGGAGTT CACGCAGGAG GTCACCGAGG TCCTGCTGCA GACCGAGCCG
TCGCTGACCG GCGCGCAGAT CCTGCACATC CGCCGCCAGC TCGCCGACGT CGCCCGCAAG
TACGGGTGGG TGGAGAACTG A
|
|---|
| Protein sequence | MSTGKVLRFD HVRGYGFLAP SDGGEDVFLH ANDLLVEKSL VVPGVVMEFE VEESDRGRKA
SAARILRGSA TGSVVGPAAV TTAPAPVVSR HDDGGDGLCD VLPAEEFTQE VTEVLLQTEP
SLTGAQILHI RRQLADVARK YGWVEN
|
|---|
| |