| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3921 |
|---|
| Symbol | |
|---|
| ID | 5672282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4688805 |
|---|
| End bp | 4689704 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641242800 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001508217 |
|---|
| Protein GI | 158315709 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0195881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC CCGACGTGGT GGACCGCGAG GTCCACTTAC CGCCGGCCCC GGCGCTGGAC
ACGCCGATCG TCCCGGCGGT GCGAAAGTCC CGCTCGATCC TGGTGTACCT GGCCTACGCC
TGGCTGATCG CGGTGATCGC GCTCGCCGCG CTGGCGGACG TGCTGCCGCT GGCGTCGTAC
TCCATTCCCA TCGGGAAGCC GCGCCAGGGA CCGGATTTCA GCTCGTTCGA CCTGTGGCTG
GGCACCGACC AGCAGGGCCG GTCGATCCTG TCGCGATGCG TGTACGGTGC GCGCGTCTCG
CTCCTGGTCG GAACCGTGGC GGGCCTCATC GGGGCCGTCA TCGGAACCCT GCTGGGCATG
CTCGCCGGCT ACCTCGGCAA GGCCGTCGAC TGGATCATCC GGCTGATCAC CGACGCGATG
CTGGCGTTCC CGCCACTGAT CCTGCTCCTG GCGCTGTCGT CCATCCTCAC GCCGAGCGTG
CGGACGCTGC TGGTCGGCCT GACGCTGCTG ATCATCCCGA CGTTCGTCCG GCTCGCGCTG
GCGAACACCC TCGCCTGGTC GTCCCGCGAG TTCGTCACCG CCGCCCGCAA CATGGGCGCG
GGGCACGTGC GGATCCTGGT GAAGGAGATC CTGCCGAACC TGCTGCCACC ACTGGGCGCG
TTCCTGCCGG TCGTGATGGC CGCGCTGATC GTGGCCGAAG GGTCGCTGAG CTTCCTGGGG
ATGGGCATCC CGCCGCCCCA GCCCAGCTGG GGCGGCATGA TCTCCGACGG CAAGGAGGCC
ATCGCCGACT CCCCGCACAT GGTGCTGGTG CCGGCGATCG TCATCTTCTT CACCGTCTTC
GCGCTGAACC AGGCGGGCGA CCACCTGCGC AGCCGCTTCG ACCGCACGAT GCGCGACTGA
|
|---|
| Protein sequence | MTTPDVVDRE VHLPPAPALD TPIVPAVRKS RSILVYLAYA WLIAVIALAA LADVLPLASY
SIPIGKPRQG PDFSSFDLWL GTDQQGRSIL SRCVYGARVS LLVGTVAGLI GAVIGTLLGM
LAGYLGKAVD WIIRLITDAM LAFPPLILLL ALSSILTPSV RTLLVGLTLL IIPTFVRLAL
ANTLAWSSRE FVTAARNMGA GHVRILVKEI LPNLLPPLGA FLPVVMAALI VAEGSLSFLG
MGIPPPQPSW GGMISDGKEA IADSPHMVLV PAIVIFFTVF ALNQAGDHLR SRFDRTMRD
|
|---|
| |