Gene Franean1_3820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3820 
Symbol 
ID5672184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4538838 
End bp4539374 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content68% 
IMG OID641242699 
Productphage tail protein 
Protein accessionYP_001508119 
Protein GI158315611 
COG category 
COG ID 
TIGRFAM ID[TIGR02241] conserved hypothetical phage tail region protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0449238 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0664032 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTTTGC TTCGACCACC GTCCGGGGCG TTGGCCCCAT CCCGCGCGTC GGCGGTGCGC 
TCCGGCGGTG CCGCCTCGGC GGCGTCGGCC GGCGGAGGCC TCAAGCCCCA GCCGGTGAAC
GGCCTGCGTT TCGAGGTGAC CATCGGCGCC TTCGAGCTCG GCGCCTTCAC CGCGATCGAG
GGGCTGGAGG CCAACTACGA GATCAAGACC TATGACGAGG GCGGCCAGAA CGGCTTCCAG
CACCAGCTCC TCGGCCGGGT GCACTACCAG AACGTCAAGC TGACCCGGCC GGTCGATGAG
AACAGCGGGA ATCTGAGCGC CTGGTTCACC GCCTTCCGCC GGGAGGCGGC CGGTAAGCCG
ACGACCGCCT CCATCGCCGC GTTCAACGAC AATCTGAAGC GCGTCGCCCA GTGGTCGATG
GCCGGCGTCT GCCCGGTCCG GTACTCCGGG CCGCGTTTCT CGACCAGCGA CGCGAAGATC
GTGACCGAGA CCCTGGAGTT CGCCCATCAG GGCTTCACCG CGGAGTTTCC GAAATGA
 
Protein sequence
MSLLRPPSGA LAPSRASAVR SGGAASAASA GGGLKPQPVN GLRFEVTIGA FELGAFTAIE 
GLEANYEIKT YDEGGQNGFQ HQLLGRVHYQ NVKLTRPVDE NSGNLSAWFT AFRREAAGKP
TTASIAAFND NLKRVAQWSM AGVCPVRYSG PRFSTSDAKI VTETLEFAHQ GFTAEFPK