Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3709 |
Symbol | |
ID | 5672075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 4392273 |
End bp | 4393031 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641242592 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001508012 |
Protein GI | 158315504 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.346062 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTGA CCGACACCGC CGCCATCGTC ACCGGAGGGG CCTCCGGCCT CGGGGCCGCC ACCGCCGCGG CACTCGCCGC GCACGGCGCC ACCGTCTTCG CGCTGGACCT GCCGGCGTCG ATCGAGTCGG CACCGCCGGT CACCGGCATC ACCTACCTGG GGGCCGACGT GACCGTCGCC GACCAGGTCG CCGCAGCCGT CGAGACCGCG GCCGGGTCCG GTGTGCCGCT GCGCGTCGTC GTCAACTGTG CCGGCATCGG CCCCTCCCAG CGCATCCTCA GCCGGGGCCG GCGGCATGAC CTCGACTTCT ACGCGAAGGT GATCCAGATC AACCTGGTCG GCACGTTCGC GGTGCTCTCC ACCGCCGCCG CCGCGATCGC CGAGACCGAG CCGGACGACA ACGGCCAGCG CGGCGTCATC ATCAACACCG CCTCCGTCGC CGCGTACGAG GGCCAGGTCG GCCAGGCGGC CTACGCGTCG TCCAAGGGCG GCGTCGTCGG CCTCACCCTG CCCGCCGCCC GCGACCTCGC CCAGTACGGC ATCCGGGTGT GCACGATCGC CCCTGGCATC GTCGAGACGC CGATGCTCGC CACCGTCTCG GACGAGTTCC GCGCCGGTCT CGCCGCGTCG GTGCCGTTCC CACAGCGGCT CGCCCGGCCG GACGAGTACG CCCAGCTGGC CCTGTCGATC ATCGACCACG ACTACCTCAA CGGCGAGGTC ATCCGGATGG ACGGCGCGCT GCGGATGTCG CCGCGCTAG
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Protein sequence | MKLTDTAAIV TGGASGLGAA TAAALAAHGA TVFALDLPAS IESAPPVTGI TYLGADVTVA DQVAAAVETA AGSGVPLRVV VNCAGIGPSQ RILSRGRRHD LDFYAKVIQI NLVGTFAVLS TAAAAIAETE PDDNGQRGVI INTASVAAYE GQVGQAAYAS SKGGVVGLTL PAARDLAQYG IRVCTIAPGI VETPMLATVS DEFRAGLAAS VPFPQRLARP DEYAQLALSI IDHDYLNGEV IRMDGALRMS PR
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