| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3291 |
|---|
| Symbol | |
|---|
| ID | 5671663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3898027 |
|---|
| End bp | 3899586 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641242180 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001507600 |
|---|
| Protein GI | 158315092 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGTA GGAGACGTTT CCTGTTTGTG GCAGTAGCCA GTGGTCTTGC GGCGGTCCTC
ACCGCCTGCG GTGGCTCCGG TTCCCCCTCG ACGTCATCTG CCTCAGGTGA ACCGGTCGCC
GGCGGTCACG GCCGGATCCT CATGTTGGGC GAGCCGCGCA GTCTGGATCC AGCGGCGCTC
GGCAACGCTT ATGCGATCAA TGCCGCCGTG GGTAACGCCT TATACGGAAC ATTGATGACC
GACGACGACA GCGGTAAGAT TCAGTTCTCC ATGGCGGAGT CGTTCACCAC CGCCGACAAC
GGCGCCACTT TCGAACTGAA ACTGCGGCCG GATCTGGTGT TCTCCGACGG GGCGCCGCTG
AATGCCGCTG CAGTGAAGTT CAACTGGGAC CGCCTGAAGA ATCCTGCTAA CGGCGCCACC
TCCCTCGCCC AGGCATCCGT GGCCGCCTCT ACCGAGGTGG TGGACGACCT CACGCTCAAG
GTCACGATGG TCACTCCCAT GCCCAGGTAC GCGGGCTCCG TCATCACCTC GTCGATGAAC
TGGATCGCCT CGCCCGCCGT GCTGGAGAAG GGAACGGAGG CCTTCGACAA GGCCCCGATC
GGTGCGGGTC CCTTCACTCT GAAGAGCTGG ACCCGCCAGG CCAGCATCGA GCTGGCGAAG
AACCCCAGGT ACTGGGACGC CCCCAAGCCC TATCTGGACA CGCTCACCCT GCGCACGCTT
GCCGACACCA ACCAGCGCTT CAACACGGTC CTTTCCGGCA CCGCGGACGC GGCCGCCGAG
TCCAGCTGGC AGAACTTCTC GAAGGCCGAG GAACAGGGCC TGGCCCTCGG CAGGCAGAAC
GTCAACGGTG GACTGTTCCT CACGATGAAC TCACGCCGGG CGCCGTTCGA CGATCCCCGC
GCCCGCCGGG CCATCGCCGC CGCGCTGGAC CTCGACGCTC TCAACCTGGC CGTCTACAAC
GGCCTGGGAA AGCCGGTCGA GACGCTGTTC ACCGAGGGCT CGCCCTTCTA CTCGAACATT
CCGCTCCGCA AGGTCGACAA GGCTGCCGCG CAGCGCCTGT TCGACGAGCT GGCCGCGGCG
GGCAAACCCG TCTCCTTCAC GTTCTCCGCG TTCCCCAGCA CAGAGAACCG GGCGATGGCG
GAGAACGTCC AGGCACAGCT CAGCACCTTT GACAACGTCA AGGTCAACAT CGAGCCCCTC
GACCAGTCCA GGCTCGGAGA GCTGTATTCG AAGCGGGACT TCGACATGGT CACCCTGTCC
TCCTTCTTCT ACGACCCCGA CCCGGTGCTG TCGACGGTCT TCGACGGGAG CTCGCCGTCC
AACCTGTCCG GCATCAACGA CCCGGAACTC AATGAGGCCC TGCAGGCCGG CCGCACCGCG
ACGAGCGACG AGGAGCGCGG GAAGGCCTAC GAGACCGTGC AGCGGCGGCT CGCGGACCAG
GTCCCGGTGG TCTTCATCAC GCGGGTGGCG CTGGGTGCCA TCGGCGGGCA GAACGTCGGC
GGCATCAGGC TCTACGGCAA CGGCTCGCTG CTGCCCGAGG AGCTGTGGAT CAGCAAGTAG
|
|---|
| Protein sequence | MLRRRRFLFV AVASGLAAVL TACGGSGSPS TSSASGEPVA GGHGRILMLG EPRSLDPAAL
GNAYAINAAV GNALYGTLMT DDDSGKIQFS MAESFTTADN GATFELKLRP DLVFSDGAPL
NAAAVKFNWD RLKNPANGAT SLAQASVAAS TEVVDDLTLK VTMVTPMPRY AGSVITSSMN
WIASPAVLEK GTEAFDKAPI GAGPFTLKSW TRQASIELAK NPRYWDAPKP YLDTLTLRTL
ADTNQRFNTV LSGTADAAAE SSWQNFSKAE EQGLALGRQN VNGGLFLTMN SRRAPFDDPR
ARRAIAAALD LDALNLAVYN GLGKPVETLF TEGSPFYSNI PLRKVDKAAA QRLFDELAAA
GKPVSFTFSA FPSTENRAMA ENVQAQLSTF DNVKVNIEPL DQSRLGELYS KRDFDMVTLS
SFFYDPDPVL STVFDGSSPS NLSGINDPEL NEALQAGRTA TSDEERGKAY ETVQRRLADQ
VPVVFITRVA LGAIGGQNVG GIRLYGNGSL LPEELWISK
|
|---|
| |