| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3189 |
|---|
| Symbol | |
|---|
| ID | 5671565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 3759609 |
|---|
| End bp | 3760916 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641242083 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001507503 |
|---|
| Protein GI | 158314995 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGC ACCATCGCTG GCGCCGTCCG CTCATGCTGA TCGCCGCGGG AGCCGCACTC
GTCTTAGCCG GTTGCAGCGT CGAGTCGGAC GACCCGCCGG CCAGCAGCCC CACCTCGGAC
CCGTTCCCGG CCCCGCCGGC GCCGGCGATC TCGCCGGGTG TCACGGCCGA CAGCATCAAG
ATCGGTTTCG TCTACCCCGA CCTCGAGGTC GTCAAGCAGT ACGTCGACAT CGACCACGGC
GACTACCAGG CCACCTTCCA AGCCCTGGTC GACAAGGTCA ACGCCACGGG CGGCATCAAC
AGCCGGAAGA TCATCCCGGT GTACGGCGCG GTCGACGTCA TCTCCCCCGC CGGCGCGCAG
GAGACCTGCG TCAAGCTGAC CCAGGACGAG AAGGTCTTCG CGGTGCTCGG CAGCCTCAAC
GCCGAGGACG CGCTGTGCTA CGTCCAGACC CACAAGACGG CGCTCGTCGG CGGTGACCTC
ACCACGCAGC GCTACGCCAA GGCGCAGGCA CCGTGGGTCT CCGACCTGCG CGGCGGCGAC
GAACTCGCCG ACGGCATCGA GCTGTTCACC GCCGACAACA CCCTGGCGGG CAAGAAGCTC
GCGGTCGTCG CCTACCGGGA CGACCAGGCG ACGCTGGACA AGGTGGTCCT GCCGGCCCTG
CAACGTCTCC AGGTCCCGGT GACCGAGACA GGCATCCTCG ACGCCGACAT CAGTGACGCG
GCCGCGGTCT CCCAGCAGTT CAACGTCTTC ATCCAGAAGT TCCGGGCCGC GGGCGTCGAC
ACCGTGCTCC TGGTCGGCGG CTCCCAGCTC CAGTTCCCCG CCGAACTCCA GAAGACCGAC
TACCGCCCCA GGCTGATGTT CGCGACCACC AGCCAGGCCG GGGCCTACCT GGCGAGCCCG
GGCGACCACG ACCCGGCCAT CATGGCCGGC GCCACCGCCC TCGGGCTCGT CGTCGACTTC
ACCGAGCCGG CCAACGCCGC GTGCATCGCC ACCCTTGAGG CCGCGCTGCC AGCACTCACC
GGCAAGCTGG TCGACCCGGC GACCGTGCCC TCAGGCCAGC CCACCCCCGG AACATCCGAA
AGCGCCGCCT GCCGCTACCT GACCCTGTTC CAGGCCATCG CCGAGAAGGC CGGCAAGGAC
CTCACCTACC AGTCCTTCCA GCAGGCCGCG TTCTCCCTCG GCTCCTTCCA GGTCCCCACC
TACCGGGACA AGGCCACCTA CAGCCGCGAG ACACCCCACG GCGCCGTCCC CCCGCGCCTG
TTCACCTTCG ATCCCGCGAA GAAGAACTTC TTCCCCGCCG CGGGCTGA
|
|---|
| Protein sequence | MTSHHRWRRP LMLIAAGAAL VLAGCSVESD DPPASSPTSD PFPAPPAPAI SPGVTADSIK
IGFVYPDLEV VKQYVDIDHG DYQATFQALV DKVNATGGIN SRKIIPVYGA VDVISPAGAQ
ETCVKLTQDE KVFAVLGSLN AEDALCYVQT HKTALVGGDL TTQRYAKAQA PWVSDLRGGD
ELADGIELFT ADNTLAGKKL AVVAYRDDQA TLDKVVLPAL QRLQVPVTET GILDADISDA
AAVSQQFNVF IQKFRAAGVD TVLLVGGSQL QFPAELQKTD YRPRLMFATT SQAGAYLASP
GDHDPAIMAG ATALGLVVDF TEPANAACIA TLEAALPALT GKLVDPATVP SGQPTPGTSE
SAACRYLTLF QAIAEKAGKD LTYQSFQQAA FSLGSFQVPT YRDKATYSRE TPHGAVPPRL
FTFDPAKKNF FPAAG
|
|---|
| |