| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3136 |
|---|
| Symbol | |
|---|
| ID | 5671514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 3690617 |
|---|
| End bp | 3691381 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641242033 |
|---|
| Product | HpcH/HpaI aldolase |
|---|
| Protein accession | YP_001507453 |
|---|
| Protein GI | 158314945 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.570038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAGT CCATCGTGCC CGCGCGCTCG ACCTCCCGGT CGCTACGGTG CCGCCTCGCT
GATGGCGAGC GAATGCAAGG CATCATTTTC CCCTTACCCT TCACCCTCGA GCTCGAGATC
GCGGCGCGTT GCCGAGTCGA CTTCTTCGTC GCCGACCTCG AGCACGGGCC CGCGGACTAC
GTGCAGCTGC AACAGCACAT CGCGCTGGCA GCGGCCCACG GCTGCGACGT CCTCGTTCGG
ACACATGCCC ACGACCCGTC CGGTATCTCC CGCATCCTCG ATCTGGGCGC GGCCGGTTTG
ATGTTCCCGA GAGTGGGCTC CAGGGCCGAC GCCGAGCGTC TCGTTGCCCT GGCAACATAC
CCGCCCGGCG GTGCTCGGGG CCTGTCAACC AGCACGCCCG CGGCGCACTA CGGTCGGTGG
TCGGCCGCGC GGACAGTTGC CGACGCCCGC GAGCGGACTC TGTTGATCGC CATGGTGGAG
ACGGTCGAGG GTGTTGAGGA CGCCTACGGG ATCGCCAGCG TCGACGGCAT CGACGCGCTC
TTCGTGGGGA CCGCTGACCT CACCGCGTCG ATGGAGATGC CGGGCGCGGT CGGTGATCCT
CGGGTACAGG AGCTCGCCCG CAGCGTCGCG CCGCAGGCGC AACGTGCAGG CAAGTGGTTG
CTGGAGGAGG CGACCGGCTC GACCAGCAGC CAGTTCGTTG TTCACAACGG AACCAAGCTC
CTGACCGGTG CGTTCGAGCG CGCCTTCGGA ACGCGGAAGA CCTGA
|
|---|
| Protein sequence | MTESIVPARS TSRSLRCRLA DGERMQGIIF PLPFTLELEI AARCRVDFFV ADLEHGPADY
VQLQQHIALA AAHGCDVLVR THAHDPSGIS RILDLGAAGL MFPRVGSRAD AERLVALATY
PPGGARGLST STPAAHYGRW SAARTVADAR ERTLLIAMVE TVEGVEDAYG IASVDGIDAL
FVGTADLTAS MEMPGAVGDP RVQELARSVA PQAQRAGKWL LEEATGSTSS QFVVHNGTKL
LTGAFERAFG TRKT
|
|---|
| |