Gene Franean1_3029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3029 
Symbol 
ID5671409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp3562262 
End bp3562999 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content65% 
IMG OID641241928 
ProductRNA-directed DNA polymerase (reverse transcriptase) 
Protein accessionYP_001507348 
Protein GI158314840 
COG category[L] Replication, recombination and repair 
COG ID[COG3344] Retron-type reverse transcriptase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGTGTC GGGTAGGGAG TCGGAGGCGG CCATATTACC GCTTGAGCCG GTCGGACAAC 
ATAACCGCCG GTGACGGGAA GGGCCGCTGC TTCGTCGGCG CGTGTGTATG TGAGGAAGAG
CTGGTGAGTG CCCTCGTGGC TAGTTCCGCC GAGCAAGACA AGGTTCAAGC CTTGCAGCAA
ACGCTTTACC GGGCGGCCAA GGCTGATCCC GGGCGGCGGT TCCACGCGCT CTATGACAAG
GTCTATCGCG GTGACCTGCT GGAGCGTGCG TGGGTCCAGG TGCGCCGTAA CAACGGTGCG
GCTGGAGTTG ACCGTGTCAC GGTCGCTGAT GTCGAGGTGT ACGGGGTTCG CCGTTTCATC
GACGAACTGG CTGCGGATCT GAAGGAGGGT CGGTGGCGGC CGGCGCCCAC GCGCCGGGTG
TTGATCCCGA AGCCCGGATC TTCGTCCGGG CAGAGGCCGT TGTCGATTCC CACAGTCCGT
GACCGGGTCG TGCAGACGGC TGTGAAGATG GTTCTCGAGT CGGTGTTCGA GGCGGACTTC
CTGCCGTGCT CGGTTGGGTT TCGGCCCGGG CTGGCGGTGC ACGACGCTCT GCAGGTGCTC
GTGGATGAGT GCTGGCGGGG CAGGCGGTGG GTGGTGGAGA CGGACATCGC CGACTGTTTC
TCGGCGATCC CGCATGATCG GTTGATGAAG GCGGTCGAGG AGCGGGTCAG TGACCGGCAC
GTTCTGACGT GGGTGTAG
 
Protein sequence
MTCRVGSRRR PYYRLSRSDN ITAGDGKGRC FVGACVCEEE LVSALVASSA EQDKVQALQQ 
TLYRAAKADP GRRFHALYDK VYRGDLLERA WVQVRRNNGA AGVDRVTVAD VEVYGVRRFI
DELAADLKEG RWRPAPTRRV LIPKPGSSSG QRPLSIPTVR DRVVQTAVKM VLESVFEADF
LPCSVGFRPG LAVHDALQVL VDECWRGRRW VVETDIADCF SAIPHDRLMK AVEERVSDRH
VLTWV