| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2269 |
|---|
| Symbol | |
|---|
| ID | 5670668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 2710563 |
|---|
| End bp | 2711903 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641241189 |
|---|
| Product | histidine kinase dimerisation and phosphoacceptor region |
|---|
| Protein accession | YP_001506610 |
|---|
| Protein GI | 158314102 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00214967 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0837693 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGCGC TGGGCCTGCG GCGGCTGCTG CGCGCCGTCC GCTCCCTGGA CGAGCCCGGC
CCGCCGGATG TCGGCCTGGT CGACGATCCC CGGTTCCGCT GGCTGCTGCC CGGCACGCTG
ATCGAGCCCG CGGACGGGCC TGCGAACGAG CCGGCGGACG GCTCCGCCCG GTCGCCTGGC
CGCACGGCGC GCGACTGGGT GGTCGACGCC GTCCTGTTCG CGTTCTCGGT GGTCTGCGGG
CTGCTACTGG TCGAGCAGGC CTCGCGGCGG GCCGACGTCC CGGATCCGCT GGTGCTGGCC
GATCTTGTCG TGGGCCTGGC ACTGTGCGGC CTGCTGTGGT GGCGGCGGCG CCGGCCGGTG
ACGCTGCTCC TGCTGAGCTG GCCCACCGGG CTGTTCTCCA CCACAGCGTC GGCCGCGTCG
GTGGTTCTGC TGTTCACCGT GGCCGTGCAC TGCCGGCTGC GCACGACCTT CCTGCTGGCA
GCCGTCTACT GGACGCCTGG CCTGGTGTAC TTCGCGATCT GGCCGGATCC CGACCTGCCC
TACGCCGGGG CGGTCGTCTT CCTGATCGTC ATGCTGGCGC TGACGGTCGG CTGGGGGGTG
TTCGTCCGCT CCCGGCGCCA GCTGCTGCTG TCGCTGCGCG AGCGGGCCCG GCTGGCCGAG
GCCGAGCAGC GGCGCGGGGT GGCCGCGGCC AGGCAGCTCG AGCGCACCCG GATCGCCCGC
GAGATGCACG ACGTCCTGGG GCATCGGCTC TCGCTGCTCA CGATGCACGC CGGGGCGCTG
GAGTTCCACC CGGGCGCGCC ACCGGAGCAG ATCGCCGGTG CCGCCGGGGT GATCCGGGAG
AGCGCCCACG AGGCCCTGCG GGATCTGCGG GCGGCGATCG GGGTGCTGCG CGAGGGCCCC
GAGGACCCGG CGGCCCGGCC CCAACCGACC CTGGACGACC TGCCCGAGCT GGTGGACGAG
TGCCGCCGGG CCGGCATGGA GATCCGGACC TACATTCACC TGGTCGAGGC GGCGAGCGCC
CCCGCGATGA TGGCCGGCAG CGCCTTCCGC ATCGCGCAGG AGGGGCTGAC CAACGCCCGG
CGGCACGCCC CCGGCGCACC GGCCCGGCTG ATCATCGACG GATCACCCGC CGACGGACTG
CACCTCGAGA TCCGCAACGC CCGCCAGCAC GGCTCCGAGC TACCGTCCCG GACCGGGCTG
CCGTCCTGGG CCCGGCCGGC CGGGACGGGG CTGCTCGGTC TCGCCGAGCG GGCCGCGCTG
GTCGGCGGGC GGCTCGAGCA CGGCCCGACC CCCGAGGGCG AGTTCCGGCT CTACGCGTGG
CTGCCCTGGG AGGGATCTTG A
|
|---|
| Protein sequence | MDALGLRRLL RAVRSLDEPG PPDVGLVDDP RFRWLLPGTL IEPADGPANE PADGSARSPG
RTARDWVVDA VLFAFSVVCG LLLVEQASRR ADVPDPLVLA DLVVGLALCG LLWWRRRRPV
TLLLLSWPTG LFSTTASAAS VVLLFTVAVH CRLRTTFLLA AVYWTPGLVY FAIWPDPDLP
YAGAVVFLIV MLALTVGWGV FVRSRRQLLL SLRERARLAE AEQRRGVAAA RQLERTRIAR
EMHDVLGHRL SLLTMHAGAL EFHPGAPPEQ IAGAAGVIRE SAHEALRDLR AAIGVLREGP
EDPAARPQPT LDDLPELVDE CRRAGMEIRT YIHLVEAASA PAMMAGSAFR IAQEGLTNAR
RHAPGAPARL IIDGSPADGL HLEIRNARQH GSELPSRTGL PSWARPAGTG LLGLAERAAL
VGGRLEHGPT PEGEFRLYAW LPWEGS
|
|---|
| |