Gene Franean1_1815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1815 
Symbol 
ID5670217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2178766 
End bp2179176 
Gene Length411 bp 
Protein Length136 aa 
Translation table11 
GC content70% 
IMG OID641240736 
Producthistidine triad (HIT) protein 
Protein accessionYP_001506159 
Protein GI158313651 
COG category[F] Nucleotide transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0400003 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0526222 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGTG TCTTCACCCG GATCATCAAC GGCGAGCTCC CGGGCCGCAT CGTCTACTCG 
GACGAGTCGG CGGTCGCGTT CCTCTCCATC GCGCCCGTCC GCCCCGGGCA CACGCTCATC
GTGCCCCGCC TGGAGATCGA TCACTGGATC GATCTGCCGG ACGAGACGGT GCGCGCGGTG
TGGAGTGCCG CGGCTGTCGT CGGGCGGGCC ATAGACACGG TGTTCAAGCC ACGGCGGGTC
GCGGCGATGC TCGCCGGGAT GGAGGTGCCG CACGCCCACA TCCACCTTTT CCCGATCGAC
ACGGAGTCGC AGATGAGCTT CGCGCTCGCC GACCACAACC CCGATCCGGC GATGATGGAC
GACGTCGCCG AGCGCCTGCG GGCGGCCCTG GCGGAGCCGC GCCGGGTCTA G
 
Protein sequence
MASVFTRIIN GELPGRIVYS DESAVAFLSI APVRPGHTLI VPRLEIDHWI DLPDETVRAV 
WSAAAVVGRA IDTVFKPRRV AAMLAGMEVP HAHIHLFPID TESQMSFALA DHNPDPAMMD
DVAERLRAAL AEPRRV