| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1461 |
|---|
| Symbol | |
|---|
| ID | 5669865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1757384 |
|---|
| End bp | 1759003 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641240381 |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_001505807 |
|---|
| Protein GI | 158313299 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5421] Transposase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.646816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGACGG CCTCGGGTGC GACGGCGGTG CAGATCGCCG AGTACGTCGG TGGCCGTCGT
CAGCGGATCG TGGCGCATGT GGGGTCCGCC CATACCGAAG CGGAGCTCGG GATCCTGCTG
GCGCGGGCCG AGGAGATGCT CGCCGACAGC CAGCAGGCGG CGCTCGACCT CGGGATCGAG
CCGGCCGTGC GCACGGCCAG GCTGCTCGGG TCGCCGCGTG AGCCGGCGCT GTTCGACCCC
GAGCCCGCCG CCGGACCTGC CGCGGTGGTC GGGCCCGCGA AGGTGCTCAC GACCGCGTCG
GTGCTGCTGT TCGACGCCCT GGCCTCGGTG TTCACCGATC TCGGGTTCGA CGCGTTGGGC
GACCCGGTGT TCCGGGACCT GGTGATCGCC CGGGTCGTGG AGCCGACGTC GCTGCTCGAC
ACCGGCCGGG TGCTCACCGA CTTGGGACGC AAGCCCGCGG CGTACGCGAC GATGAAACGC
ACCCTGACCC GCTGCGCCTC CGGCGGCTAC CGCGACCAGG TCGCCGACCT GTGCTTTGCC
CACGCCCTGG CCCACGGCGA CGTCTCCCTA TGCCTCTATG ACGTGACCAC GCTGTACTTC
GAGGCCGAGA AGGAAGACGA CCTACGCAAG GTCGGCTACT CCAAGGAACG TCGCGTCGAC
CCGCAGATCG TCGTCGGGCT GCTTGTCGAC CGTTACGGCT TCCCGCTGGA GATCGGCTGC
TTCGAGGGCA ACCGGGCCGA GACCGCGACG ATCCTGCCGA TCATCCGCCA GTTCAAAGAC
CGTCACCAGC TCGAGAACCT GGTCGTGGTC GCCGACGCCG GCATGCTGTC CGCGACCAAC
CTGCGTGAAC TCGACGACGC CGGGTTCGGG TTCATCGTCG GCTCACGGGT CACCAAGGCG
CCGATCGACC TGGCCTCCCA CTTCCGCTGG CACGGCGACG CCTTCACCGA CGGCCAGGTC
ATCGACACGG TCACGCCCCG CACAGGGCGC AACCGTGACA ACGACACCGA CGTGAAGACC
GAGCCTGTCT GGACCCGTGA CCAGCACCCC AGGTCGTGGC GAGCCGTCTG GGCCTACTCG
GCCAAGCGCG CCGCCCGCGA CAACAAGACG CTGACCGCGC AGGAGAACCG CGCCCGCGCT
GTCGTCGACG GCGAGAAGAC TACCCGCACG CCGAGATTCG TCACCGTCAA GGGCGACGCC
GCCACCCTCG ACGAGGCCAG CCTCACCCGG GCCCGCCGGC TCGTCGGGCT GAAGGGCTAC
GTCACCAACC TGCCGGTCAC CGTCCTGACC GCCGACCAGG TCATCTCGAA CTACCACGAC
CTTTGGCACG TCGAGCAGTC GTTCCGGATG TCGAAGACCG ATCTCGCTGC CCGGCCCATG
TTCGTCCGCA CGAAGGAGGC GATCGACGCC CACCTGACGA TCGTGTTCAC CGCGCTCGCC
GTCGCCCGCA CCGTTCAGAA CCGCACCGGC CTCGCGGTCC GCAACGTGAT CCGACAGCTC
CGCCCGCTGC GCTCCGCGAC CATCGCGATC AACGGCGCCA TCCAGACCTT CCCGCCCGCG
ATCAACCCGG ACAAACAAGC GGTACTCGAC ACCCTCCACG CGGCGGCCGT CACGCACTAA
|
|---|
| Protein sequence | MRTASGATAV QIAEYVGGRR QRIVAHVGSA HTEAELGILL ARAEEMLADS QQAALDLGIE
PAVRTARLLG SPREPALFDP EPAAGPAAVV GPAKVLTTAS VLLFDALASV FTDLGFDALG
DPVFRDLVIA RVVEPTSLLD TGRVLTDLGR KPAAYATMKR TLTRCASGGY RDQVADLCFA
HALAHGDVSL CLYDVTTLYF EAEKEDDLRK VGYSKERRVD PQIVVGLLVD RYGFPLEIGC
FEGNRAETAT ILPIIRQFKD RHQLENLVVV ADAGMLSATN LRELDDAGFG FIVGSRVTKA
PIDLASHFRW HGDAFTDGQV IDTVTPRTGR NRDNDTDVKT EPVWTRDQHP RSWRAVWAYS
AKRAARDNKT LTAQENRARA VVDGEKTTRT PRFVTVKGDA ATLDEASLTR ARRLVGLKGY
VTNLPVTVLT ADQVISNYHD LWHVEQSFRM SKTDLAARPM FVRTKEAIDA HLTIVFTALA
VARTVQNRTG LAVRNVIRQL RPLRSATIAI NGAIQTFPPA INPDKQAVLD TLHAAAVTH
|
|---|
| |