Gene Franean1_1380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1380 
Symbol 
ID5669788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp1670392 
End bp1671186 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content76% 
IMG OID641240306 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001505733 
Protein GI158313225 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCCGGT GGCAGGAGGC CTCGCCGCTG ATGGCGGGTC TGGCCGGGGC CGAGGAGGTC 
GTCGACGGCT GTGGTCGGGA CCGGACGGTC CCGGACGCGG TGGCGAACGG CCGGCTGCTG
TTCCTGCTGT GCCGCGCCTG CGAGGGCGAC CAGGCCGCCA CGCGAGTCGC GGTCGCCCGG
GTGGTCCCGG CGCTGGTCAC CAAAGCGGCG GCGCACTGCC GGACCGCCGG ACGCGGCTTC
GACGCGGTCT TCGACGACCT GCTGGCGGCG GCGTGGATCG TGGTCGCGAC CTACCCGGTG
GCCCGCCGGC CCGAGAAGAC GTGGATCAAC ATCGTCCTCG ACACCGAACG GGCGGTGTTC
GGCCGGTCCC GGCTGGTCGA CCGGCTGACG GTGCTCCTCC CGCCGCCGAT CCTCGCCGAG
CATCTGACGG CCCGCACGTC CGCCGGCACC GGTCGCGGCA ACACCGGCAC CGGTCGCGCC
CGGGACCCGT TGCTGGAGCT GGTCGAGTTG CTGGCCGAAG GCCGTCGCCT GGGGCTGTCG
GATGCTGCCC TGCGCATCCT GGTCGAGTTC GGTGTCGACG GCCTGAGCTC CCAGCAGGTG
GCGGCCCGAG ACGGCGTGAC CGACCGGGCG GTGCGCCTGC GCCGCCAGCG GGCCGCCGCG
GAACTGGCCA CCCTGCTCGG CCTCCGCGAC GGCGGCGGCC AGCACCAGCC GGCGCGCACC
CGCGACACCG ACGGAAGCGG CGTCCAGCGG CGGACGCCCG CCAGGCGGCC CCGGCCGGAT
GGGCGGGCGG CATGA
 
Protein sequence
MSRWQEASPL MAGLAGAEEV VDGCGRDRTV PDAVANGRLL FLLCRACEGD QAATRVAVAR 
VVPALVTKAA AHCRTAGRGF DAVFDDLLAA AWIVVATYPV ARRPEKTWIN IVLDTERAVF
GRSRLVDRLT VLLPPPILAE HLTARTSAGT GRGNTGTGRA RDPLLELVEL LAEGRRLGLS
DAALRILVEF GVDGLSSQQV AARDGVTDRA VRLRRQRAAA ELATLLGLRD GGGQHQPART
RDTDGSGVQR RTPARRPRPD GRAA