| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1262 |
|---|
| Symbol | |
|---|
| ID | 5669675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1520108 |
|---|
| End bp | 1521334 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641240194 |
|---|
| Product | Beta-ketoacyl synthase |
|---|
| Protein accession | YP_001505622 |
|---|
| Protein GI | 158313114 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.11208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCCGA CCCCCAGGCA GGTCGTCGTC ACCGGCCTCG GGGCTACCAC TCCCCTCGGC
GGCGACGTGC CGTCCACGTG GGAGGGGCTG CTCTCCGGCC GCTCCGGCGC GCGTCGCCTG
ACTGAGGACT GGGTCGAACA GCTCCCCGTC CACATCGCCG CCCCGCTCGC CGTCGAGCCA
CCGCTGGGCC GCGTCGAGGC CAGAACCCTC GACCGCAGCC AGCAGATGGC GCTGGTCGCC
GCGCGGGAGG CGTGGGCCCA CGCGGGCTCC CCGGAAGTCG ACTCCGAGCG CCTCGCCGTC
TGCGTGGCGT CCGGGATCGG CGGGGTGCTG ACCCTGCTCA ACCAGCACGA CGTGCTGCGG
GAGCGTGGGG CTCGGCGGGT GTCCCCGCAC GTCGTGCCGA TGCTGATGCC GAACGGCCCG
GCGAGCACGG TCGGCCTGGC GTTCGGCGCC AAGGCCGGTG TGCACGCGCC GGTCAGCGCG
TGTGCGTCCG GCTCGGAGGC GATCGCGCTG GCGCTGGACA TCATCCGCGC CGGCCGGGCG
GACATCGTGA TCGCCGGCGG CACGGAGGCG GCGATCGCCG CCCTGCCGAT CGCCGGGTTC
GCGCAGATGC AGGCGCTCTC CCGGCGTAAC GACGCTCCCG AGGCCGCCTC GCGACCGTTC
GACAAGGCCC GGGACGGCTT CCTGCTCGGC GAGGGCGCGG CGGTCATCGT GGTGGAGGCG
GCGGAGCACG CGCAGGCACG CGGCGCGCGG GTCCTCGGGA CCCTCGCCGG CGCCGGCATC
AGCTCGGACG CCTACCACGT GGCCGCGACG GATCCGACCG GTGCCGGCGC GGCCCGGGCG
ATCCGGGCGG CGCTGCGCTC GGCCTCCCTG GAGCCCGAGG ACGTCATCCA CGTCAACGCG
CACGCGACGT CGACCCCGAC CGGAGACGTC GCCGAGTCGA TCGCGCTTCG GCTGGCGCTG
GGCTCCGCGC TCGACTCGAT CGCGGTGACC TCGACCAAGT CGATGACCGG CCACCTGCTC
GGGGCGGCCG GCGCGCTGGA GGCCGTGGTC ACGCTGCTCT CGCTGCGCGA GCGCGTCGTC
CCCGCGACGC GCAATCTCGA CGCGCTCGAC GACGAGATCG CCCTGGATGT CGTGAGCATC
GACAACCGGG AGCTCGGCAC CGGCGCGGGC CTGTCGAACT CGTTCGGGTT CGGTGGGCAC
GACGTCTGTC TCGCGTTCAC GGTGTAG
|
|---|
| Protein sequence | MTPTPRQVVV TGLGATTPLG GDVPSTWEGL LSGRSGARRL TEDWVEQLPV HIAAPLAVEP
PLGRVEARTL DRSQQMALVA AREAWAHAGS PEVDSERLAV CVASGIGGVL TLLNQHDVLR
ERGARRVSPH VVPMLMPNGP ASTVGLAFGA KAGVHAPVSA CASGSEAIAL ALDIIRAGRA
DIVIAGGTEA AIAALPIAGF AQMQALSRRN DAPEAASRPF DKARDGFLLG EGAAVIVVEA
AEHAQARGAR VLGTLAGAGI SSDAYHVAAT DPTGAGAARA IRAALRSASL EPEDVIHVNA
HATSTPTGDV AESIALRLAL GSALDSIAVT STKSMTGHLL GAAGALEAVV TLLSLRERVV
PATRNLDALD DEIALDVVSI DNRELGTGAG LSNSFGFGGH DVCLAFTV
|
|---|
| |