| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0946 |
|---|
| Symbol | |
|---|
| ID | 5675668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1108340 |
|---|
| End bp | 1110259 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641239874 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001505308 |
|---|
| Protein GI | 158312800 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.039967 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.348803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGATCA CGTCCTCCCG CACGGCCGAC ACGTCCCGCC CCGCGGCGAG TCTGGTAGCC
GCGCCAGGCT CGGCGACGGG CCGCAGCCCG CACGCCGGCC TGCGCTCCTA CCTCGCGCAC
CTGATGACCT TCCGGTGGCG GGCGGCGGCG GTGCTGTGCG TGTTCGTCCT CGCGAACGCG
CTGCTCGCCG TCGTACCGAT CTTCGTGGGC CGGTTCGTGG CCGCACTCGC CGCCGTACCG
GTCGACACCG GTGCCGCCTA CCAGGCCGCC GCGCTGCTGA TCTGTTGCGG GATCGGCCAC
GACCTGTCCT GGCGCAGCGG TGAGCTGCTG TGGGTGCGGC TGATCCTCGC CCGCGGCTAC
GACTACGAGA ACCTCGTCTT CGACAAGGTG ATCACGCAGC CCTACCCGTA CTTCGTCGGC
GCCTTCACCG GAAAGATCAG CAGCTACGTC GGCACGCTCG GCCGGGAGTA CCGCGAGTTC
CTCAACGCGG TGTACTGGGA GTTCTGCGAA CAGCTGGTCA GGGTGCCGGC GCTCGCGGTG
ATCATGTTCA CCGTGAACGT CCCGACCGGC TGCGCGTTCA CCGTGTCGCT ACTGATGATG
CTCGCGCTGG GGCGGCTGAC GGTCTCGCGG GTCGCCGCCG AGGAGCGCAA CACCGCCGAC
ACCGCCTCCG ACCTGGACGG CCGGATCATC GACGTGATCG CGAACTTCGT CGCGGTGAAG
TCCTTCGGCC GCGAAGGCGC CGAATCCGCG CGGGTGCGCG CCGAGCGCCG GGGTGTCCTG
CGGGCAGCGA CGGGGTCCTT CCGGTGGAAC ATCGTGTACT TCGCGTCGAT GAGCCTGGTC
GTGCGCTACC TGGTCGGACC CGGGACGATC CTGCTGAATC TGCACCTGTT CCTGGCCGGC
GATCTCACGC TGGCGCAGCT GACCACCTTC CTGGCCGCCC TCGCGGTCTT CTCTGACTAC
ATCTGGAACA CGGTCTGGCT GGTCTCACAG CTGAATCTGC GATTCGCCCG GGTCGAGGAG
GCCTACCACT ACCTGTTCGG CGGCCGCGAC ATCGTCCGGG AGGACCGGCA CCAACAACCC
ACCGCACACG GATGGCCTGC CGCCCTCGAA CGACCCGACG TCCACGGAGC ATCGCAGCTC
CACAGGGCGA CCCAGCTTCC CGGGCCGGTC GGCTACACCC GGTCGCTCAG CATCCACGAT
CTGCGCTTCG CCTACCCGGA CGAACCCGGG CGCGCGGTGC TCGACGGCAT CACCCTGGAG
ATCGCCCGGA ACGAGAAGGT CGGGATCGTC GGCCAGAGCG GCAGCGGGAA GTCGACCCTG
CTGAAGCTCC TGCTCGGCTA CTACCCGCTG CCCGCCGGGA CTCTGGCGCT CGACGGCACC
CCGATCGACG ACCGCCAGCT GGCCGGCCTG ATCTCCTACG TCCCGCAGGA CGTCACCCTG
TTCCACCGCT CGATCCGGGA CAACATCGTC TACGGCAGCG CCGCCGGGGT GACCGACGAG
CAGGTCATCA CGGCCGCGCG CCGCGCCCAC GCCCACGAGT TCGTCAGCCG CACCGGTCAG
GGGTACGACA CCCTGGTCGG CGAGCGGGGC ATCCGGCTCT CGACCGGGCA GCGTCAGCGG
ATCGCGCTGG CGCGCGCGTT CCTCGGCGAC GCGCCCATCC TCATCCTGGA CGAGGCGACC
AGCGCGCTCG ACAGCGAGAG CGAACGGCTC GTTCAGGACG CCCTGGAGGA TCTGTGGGCC
ACCCGGACGG TGATCGCCAT CGCGCACCGG CTGTCGACCC TGCTGACCAT GGACCGGATC
GTTGTCCTGG ACGGCGGGCA GATCGCCGAG CAGGGCACGC ATGAGGCCCT GCTCGAGCTG
GGCGGGCGGT ATGACCGGCT GTGGCGCCGC CAGAGCGGCG GGTTCGTCGC GGTCGACTGA
|
|---|
| Protein sequence | MTITSSRTAD TSRPAASLVA APGSATGRSP HAGLRSYLAH LMTFRWRAAA VLCVFVLANA
LLAVVPIFVG RFVAALAAVP VDTGAAYQAA ALLICCGIGH DLSWRSGELL WVRLILARGY
DYENLVFDKV ITQPYPYFVG AFTGKISSYV GTLGREYREF LNAVYWEFCE QLVRVPALAV
IMFTVNVPTG CAFTVSLLMM LALGRLTVSR VAAEERNTAD TASDLDGRII DVIANFVAVK
SFGREGAESA RVRAERRGVL RAATGSFRWN IVYFASMSLV VRYLVGPGTI LLNLHLFLAG
DLTLAQLTTF LAALAVFSDY IWNTVWLVSQ LNLRFARVEE AYHYLFGGRD IVREDRHQQP
TAHGWPAALE RPDVHGASQL HRATQLPGPV GYTRSLSIHD LRFAYPDEPG RAVLDGITLE
IARNEKVGIV GQSGSGKSTL LKLLLGYYPL PAGTLALDGT PIDDRQLAGL ISYVPQDVTL
FHRSIRDNIV YGSAAGVTDE QVITAARRAH AHEFVSRTGQ GYDTLVGERG IRLSTGQRQR
IALARAFLGD APILILDEAT SALDSESERL VQDALEDLWA TRTVIAIAHR LSTLLTMDRI
VVLDGGQIAE QGTHEALLEL GGRYDRLWRR QSGGFVAVD
|
|---|
| |