| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0887 |
|---|
| Symbol | |
|---|
| ID | 5669301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1034295 |
|---|
| End bp | 1034879 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641239814 |
|---|
| Product | sec-independent translocase |
|---|
| Protein accession | YP_001505249 |
|---|
| Protein GI | 158312741 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1826] Sec-independent protein secretion pathway components |
|---|
| TIGRFAM ID | [TIGR01410] twin arginine-targeting protein translocase TatB
[TIGR01411] twin arginine-targeting protein translocase, TatA/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0281514 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.284391 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGC CCTTCGCCGG CGGCGGCAGG CGGGGTACTC TGACCGTTGT GTTCAACGGC
GTCGGGTGGG GCGAGGTAGT CGTACTGCTC CTGATCGGGC TGTTCGTCTT CGGGCCCGAT
CGGCTGCCCA GGGCCGCCCG CGACGCGGGC CGGATGCTGC GCCAGTTCCG CCAGATGGCG
AACGGCATGC GCAACGACCT GCGGTCCGAG CTGGGCCCCG AGCTGGCCGA CCTCGACCTG
CGGGACCTGC ATCCCAAGAC CTTCGTCCGC AAGCACCTCT TCGAGGGCGA CGACGACTCG
CTGTTCCCGG CCTACCCGGG CAAGCGCACG TCGTTCGACT CGCTGCTGGG TGAGGACGAG
CCGCCGGCCA CGCCCGCGCT GACCAAGGCC CACCTGCCGG CCGGCACCGA GAGCAGCACG
GCGGCCAAGG CGGGCGCGAA GCCGGCGAAC CGGCCGTCGC TGACCAAGCC GAGCCCGGCT
GGCGGCACGG CTGTCGCGGC CAGCTCGCCG CCGCCCGCAC CCGCGCGTGT GGAGCGGGCC
GAGTCGACGT CGACCCCGCC CCCGTTCGAC CCCGACACGA CCTGA
|
|---|
| Protein sequence | MFEPFAGGGR RGTLTVVFNG VGWGEVVVLL LIGLFVFGPD RLPRAARDAG RMLRQFRQMA
NGMRNDLRSE LGPELADLDL RDLHPKTFVR KHLFEGDDDS LFPAYPGKRT SFDSLLGEDE
PPATPALTKA HLPAGTESST AAKAGAKPAN RPSLTKPSPA GGTAVAASSP PPAPARVERA
ESTSTPPPFD PDTT
|
|---|
| |