| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0796 |
|---|
| Symbol | |
|---|
| ID | 5669212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 928522 |
|---|
| End bp | 929403 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641239724 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001505160 |
|---|
| Protein GI | 158312652 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.663558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.058004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGCCG CCAACGAGGA CACAGGCCCG CTGGCGGGCC GGGTGGCCGG CGCGGCCGGG
AACACGCGCC TGCTGGCCGG TCGGATCGCG GTGGTCACGG GCGCGTCGAG CGGCATCGGT
CGCGCCGTCG CCGCCCGCCT GGCCACCGAC GGCGCGACCG TGCTGGCCCT CGGCCGCGAC
CAGGCCCGCC TGGACGCCCT GGCCAAGGAG TCCGGCGCGG ACACGACAGA CGGCGCGGCC
AACCCGACAG ACGGCGCGGC CTCCGGCGCC GGGACGCTCG TGCCGGTGCG CCTGGACCTG
ACTGACACCG CAGCGGTGGA CCAGTTCGCC GCGGACACCG CCAGCCGGTA CGGCCGGGTG
CACCTCCTCG TCCACAGCGC GGGGGGCTAC CTCACCTCCC GGGTCGAGGA CGCCTCCGTC
GACGACTTCG ACACCCAGTA CGCCGCGAAC GTCCGCGGCC CGTTCGCCCT CACCCAGCGC
CTGCTCCCCG CCCTGCGCGC GGCGGCATCG GAAAGCGCGC CCGAGACGTC GGGCGCGGCG
GAGGAACCGG GCGCCGACGT GATCGTCATG AACTCGTCGC AGGGGGTCCG GGCGGGTGCC
GGCACCAGCC AGTTCGCGGC CACCCAGCAC GCGATGCGGG CGGTCGCGGA CAGCCTGCGC
CAGGAGGTCA ACGCCGACGG CATCCGGGTG GTGACCCTCC ACCTCGGCCG GACGGCGACG
CCCCGCCAGG AGACCATTTT CCTGCGCGAG GGCCGGCCCT ACCGGCCCGA GCTGCTGATC
CAGGCCGACG ATGTGGCGGA CCTGGTCACC TACCTGACCC GCCTCCCGCG CACCGCCGAG
ATCACCGAAC TACACCTGCG CCCCGCCAAG AAGAGCTACT GA
|
|---|
| Protein sequence | MTAANEDTGP LAGRVAGAAG NTRLLAGRIA VVTGASSGIG RAVAARLATD GATVLALGRD
QARLDALAKE SGADTTDGAA NPTDGAASGA GTLVPVRLDL TDTAAVDQFA ADTASRYGRV
HLLVHSAGGY LTSRVEDASV DDFDTQYAAN VRGPFALTQR LLPALRAAAS ESAPETSGAA
EEPGADVIVM NSSQGVRAGA GTSQFAATQH AMRAVADSLR QEVNADGIRV VTLHLGRTAT
PRQETIFLRE GRPYRPELLI QADDVADLVT YLTRLPRTAE ITELHLRPAK KSY
|
|---|
| |